Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0271 ATGAACACTTTTTCACATGTTCCTCCGGGCTTTCGGTTCCATCCAACTGATGAAGAACTTGTTGATTACTACCTTAAGAAAAAAGTAGCTTCAAAAAGAATTGATCTAGATGTAATAAAAGATGTTGATCTCTATAAAATTGAGCCATGGGATCTTCAAGAATTATGCAAATTAGGAACGGATGAACAAGGTGAATGGTATTTCTTTAGTCATAAAGATAAGAAGTACCCAACTGGAACCCGCACCAATAGAGCTACAAAGGCAGGATTCTGGAAAGCTACGGGAAGAGACAAGGCAATATACTTGAAGCATTCACTGATTGGCATGAGAAAGACTCTTGTATTCTACAAAGGAAGAGCCCCAAATGGACAGAAATCTGACTGGATCATGCATGAGTATCGGCTAGAAACTAATGAAAATGGAACTCCCCATCAGGAAGAAGGCTGGGTTGTATGCAAAGTGTTCAAGAAAAGAATGACAACAGTGCGGAAAGTTGGGGAATATGAATCACCATGCAGTTGGTATGATGATCAAGTCTCCTTCATGCAAGAACTTGATCCTCGTTCTCACCCTTATGCATCACAACACCAGCACTACCCTTGCAAGCAAGAGTTAGAATTAATGCAATACAATATGCCCCATGATGCTAATTTCCACCAACTTCCACAACTTGAAAGCCCCAAAGTTCCTCAATCTTATGGCTATGATAATGACAATGGAAGTGCTTTGCAGTCCTCATCACTCACTCAAGAAGAACACATACATCATAGCCAACAGCAACAAAATATGCACTTGCTTTATGGTAATACCAATGATCAAGTTATGGATTGGCGAGTACTCGACAAGTTTGTTGCTTCTCAGCTAAGTCATGATGATCAAGAGGTTTCCAAGGAAATAAACTATTCAAATGTTTCTGAACAAATTACTATGCTTGCAAATCGATCCGAAAAATCTGAAATTTGGCAGGACTATGGTTCCACGTTCACCTCGAGTTGCCAGATTGATCAGTGGAAGTGA 1017 0.3982 MNTFSHVPPGFRFHPTDEELVDYYLKKKVASKRIDLDVIKDVDLYKIEPWDLQELCKLGTDEQGEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLKHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTPHQEEGWVVCKVFKKRMTTVRKVGEYESPCSWYDDQVSFMQELDPRSHPYASQHQHYPCKQELELMQYNMPHDANFHQLPQLESPKVPQSYGYDNDNGSALQSSSLTQEEHIHHSQQQQNMHLLYGNTNDQVMDWRVLDKFVASQLSHDDQEVSKEINYSNVSEQITMLANRSEKSEIWQDYGSTFTSSCQIDQWK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0271 338 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Lal15g0271 338 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Lal15g0271 338 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 315 - -
Lal15g0271 338 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
Lal15g0271 338 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 315 - -
Lal15g0271 338 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Lal15g0271 338 MobiDBLite consensus disorder prediction 226 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0271 Lal-Chr15 1846100 1851591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0271 1 338 NAC Transcription Factor Family AT1G12260 55.968 5.94e-136 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal15g0271 NAM 1.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0271 - - tcc:18606319 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0271 15 1846100 1851591 Lal15g0271 15 1846100 1851591 ECH
Lal16g0334 16 2019732 2025386 Lal15g0271 15 1846100 1851591 LSH