Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0251 ATGGCAACATTTGAAAAGGAAGATCTGGGTTTGAGCCTAAGCTTGAGTTTCCCTCACAACCCCCCAAATCCTCTACATTTCAATCTTGTGTCTACTCCTTATTCCTCTTCACCTTCTCCTTGCAATCCTCAAAAACCTTCTTGGACTAATCATCCTTTCACATCTTCAGATCGAGATTCTGAAACATGCAAAGGAGAACGTGAATCATTCCTGCGCGGAATCGACGTGAACCGATTACCTTCTGGAGTTGATTGTGAAGAAGAGGCTGGTGTTTCATCTCCAAACAGCACCGTCTCAAGCGTAAGCGGAAAACGGAGCGAAAGAGAACCCAATAGTGAAGAAAATGACATTGATAGATCCTTCTTTAGAGGAACCAGCGACGAAGAAGAAGCTAGAAAAAAACTCAGACTCTCTAAACTCCAATCCGCTATTCTCGAAGACAGTTTCAAAGAACACAACACTCTTAACCCCAAACAAAAGCTGGCACTGGCGAAGAAGTTGGGCCTTAGAGCGAGACAAGTAGAGGTGTGGTTCCAGAACAGAAGAGCAAGGACTAAGTTGAAGCAAACAGAGGTGGATTGTGAGTTTCTGAAACGGTGTTGTGAGAATTTAACGGAGGAAAATCGGAGGTTGCAAAAGGAAGTTCATGAGCTTAGGGCACTGAAACTTTCCCCTCAATTCTACATGCACATGACCCCACCCACTACTCTCACTATGTGTCCATCATGTGAGCATGTCACTGCTCCTTCCTCAACCGTTGATGTTGCCACGCGTCACCATACTATGGCCTTAACTCATCCTCGGCCCATCTCTGTTGTTAGCCCATGGGCTTCTGCTGCTGCTACTATTACTATCCCTCAAAGACCCTTCGATGTGCTTCGCCCTAGATCGTGA 894 0.4575 MATFEKEDLGLSLSLSFPHNPPNPLHFNLVSTPYSSSPSPCNPQKPSWTNHPFTSSDRDSETCKGERESFLRGIDVNRLPSGVDCEEEAGVSSPNSTVSSVSGKRSEREPNSEENDIDRSFFRGTSDEEEARKKLRLSKLQSAILEDSFKEHNTLNPKQKLALAKKLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVHELRALKLSPQFYMHMTPPTTLTMCPSCEHVTAPSSTVDVATRHHTMALTHPRPISVVSPWASAAATITIPQRPFDVLRPRS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0251 297 PANTHER - 3 285 - -
Lal15g0251 297 SMART halz 188 231 IPR003106 GO:0006355|GO:0043565
Lal15g0251 297 MobiDBLite consensus disorder prediction 90 105 - -
Lal15g0251 297 MobiDBLite consensus disorder prediction 31 66 - -
Lal15g0251 297 SMART HOX_1 130 192 IPR001356 GO:0003677
Lal15g0251 297 MobiDBLite consensus disorder prediction 31 56 - -
Lal15g0251 297 Pfam HD-ZIP protein N terminus 5 109 IPR006712 GO:0005634
Lal15g0251 297 PRINTS Lambda-repressor HTH signature 159 168 IPR000047 GO:0003677
Lal15g0251 297 PRINTS Lambda-repressor HTH signature 168 184 IPR000047 GO:0003677
Lal15g0251 297 MobiDBLite consensus disorder prediction 85 125 - -
Lal15g0251 297 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Lal15g0251 297 Pfam Homeobox associated leucine zipper 188 222 IPR003106 GO:0006355|GO:0043565
Lal15g0251 297 SUPERFAMILY Homeodomain-like 126 189 IPR009057 -
Lal15g0251 297 Pfam Homeodomain 132 186 IPR001356 GO:0003677
Lal15g0251 297 CDD homeodomain 132 189 IPR001356 GO:0003677
Lal15g0251 297 Gene3D - 136 186 - -
Lal15g0251 297 MobiDBLite consensus disorder prediction 106 125 - -
Lal15g0251 297 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 3 285 - -
Lal15g0251 297 Coils Coil 187 221 - -
Lal15g0251 297 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0251 Lal-Chr15 1708339 1710241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0251 6 297 Homeobox Transcription Factor Family AT4G17460 60.065 1.37e-105 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal15g0251 HD-ZIP_N 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0251 K09338 - gmx:100813367 392.889