Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0239 ATGGGCAAGCAAGGTCCTTGCTATCACTGTGGAGTTACTAGCACACCACTTTGGCGCAATGGGCCACCAGAGAAGCCGGTACTATGTAATGCATGTGGATCTCGATGGAGGACTAAGGGAACACTTGCAAATTATATCCCTTTACATGCTCGGGCAGAAGGTGCCGATTATGAGGATCAAAGGTTTTCCAGGGTAAAGAGCATATCATTAAATAAGAATAAGGAAATGAAATCGCTCAAACGAAAGCTGAACAATGATAATATTGTATTTGGAGGGCTTGCTCCTGATTACAACCAAGGATTTCGAAAGGCTTTAGATGAAGATACAAGTAATCGATCAAGTTCAGGATCAGCTATCTCTAACTCAGAGAGCTGTGCTCAATTTGGTGGCATGGATGCTAATGATTTGACAGGTCCTGCTCAGCCAGTGGTGTGGGATACTGTGGTGCCTTCAAAAAAGAGGACATGTGTGGGTCGTCCAAAACATTCTTCTGTTGAGAAGCTCACAAAAGATTTATGCACTATTCTTCATGAACAGCAGTCTTGTTTTTCTGCATCTTCCGAAGGGGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCAGTCGAGATAGGCCATGGAAGCATTCTCATCAGGCATCCTACCTACATAGCTCGTGAAGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCACAATGAATGAGGCATATTCATATCCTGGTGCCGTTCTTATGCATAATGATTCCAGTAGTATGACCTTCTCATCTCAGGGAGTTGAAAAGGATGTAGTAAACTACGGGGAGTTCTTGAAAAACTTGACGAATGAAGAGCAGCAGCAACTACTTAAGTTTCTTCCCGTGGTCGATGCTGTTAAACTTCCTGATAGCCTCAAGTTCATGTTCAATAGCTCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTGCGGAAGGTGTCTTTGATATCTCTTTATCTGGGGCAAAACCTGAAGACTGCAAGACTTTGAAAAGGCTTGCATTGTCCAATCTCTCAAAGTCAAAATGGGTAGAACACTATTATTTTCTTAAGAAATGTAAATCCAGAACTGGAAAATGTGTTAATCTGGGGTCAAATGGTACACTATCAACTAATGATGTAAATGTAAAGAGATCGCGTGACAGCCGAAATCAAAACTTTCCAGAATTGAATACAACAATGAGGAGTCCCAAAAGGGTGATAGCAAAGGCTGGCTGTGAGGGAAAGGAAGTTGTAGAAGATGGCTCTTACTTCAGTCCCAAAAGCCTATTTGCTTTGCCTCCCGATGCTAGCTCGCTCTTGCTGGATTCTTTAAATTTCGTTGCCGAGAGTTCCGATCAGGATCTGCTGCTAGAGGTGCCATCTAATAATTCTTTTCCTCAGGCAGAGCTTCTGCCCCAGAATTTAAGTTTTGGTGTTAAAGCTAGCACTAGTAGTAGCTCAGTATACTCACATCTCCATCATTAA 1500 0.42 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYIPLHARAEGADYEDQRFSRVKSISLNKNKEMKSLKRKLNNDNIVFGGLAPDYNQGFRKALDEDTSNRSSSGSAISNSESCAQFGGMDANDLTGPAQPVVWDTVVPSKKRTCVGRPKHSSVEKLTKDLCTILHEQQSCFSASSEGDLLFESETPMVSVEIGHGSILIRHPTYIAREEESEASSLSVDNKQCTMNEAYSYPGAVLMHNDSSSMTFSSQGVEKDVVNYGEFLKNLTNEEQQQLLKFLPVVDAVKLPDSLKFMFNSSQFKENLTYFQQLLAEGVFDISLSGAKPEDCKTLKRLALSNLSKSKWVEHYYFLKKCKSRTGKCVNLGSNGTLSTNDVNVKRSRDSRNQNFPELNTTMRSPKRVIAKAGCEGKEVVEDGSYFSPKSLFALPPDASSLLLDSLNFVAESSDQDLLLEVPSNNSFPQAELLPQNLSFGVKASTSSSSVYSHLHH 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0239 499 PANTHER OSJNBB0038F03.10 PROTEIN 1 265 IPR044589 -
Lal15g0239 499 PANTHER OSJNBB0038F03.10 PROTEIN 266 499 IPR044589 -
Lal15g0239 499 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
Lal15g0239 499 CDD ZnF_GATA 6 54 IPR000679 GO:0006355|GO:0043565
Lal15g0239 499 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Lal15g0239 499 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Lal15g0239 499 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Lal15g0239 499 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Lal15g0239 499 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 255 367 IPR044867 -
Lal15g0239 499 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 43 - -
Lal15g0239 499 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 266 499 - -
Lal15g0239 499 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0239 Lal-Chr15 1644082 1650090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0239 1 478 C2C2-Gata Transcription Factor Family AT4G17570 51.357 2.21e-145 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal15g0239 GATA 5.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0239 - - gmx:100803914 729.939