Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0238 ATGGCAGCATCAGTCAATATTGGTCATTCTGAAGAATTTTCTGGGAAGCGATCAATGGAAAATGGGGACTGCACTTCTCTTACTCGGTCCATGTATAAGCGGCGTAAAGTTTCTGCCATTCGTGATTTCCCAGAGGGATGTGGACCATTGGCTTCAAGTGTTGTTCCAGTGTTACAGGTAGATATTAGTTCCGCTAATGGTACAACAGTTGACGATAAGAATGGTGATCATTCAGGGGATGATACTGTTAGAACGTCCAACTGTAAAGCTGATTCTCAGCATTCTGAGTTCAAAAAAGATTCGTTTCTTACCGAGTCTCTTCGCCAAACAATTGATTGTAGTTTGAAGAATGAAAATTTAGTGGTCGCATCTCATCATGTAAATGGGCTTAGTTTGGCAAATGATGATTCTGCAGAAGAGCCAATGGTGGGCATGGAAGCTTTGAAGGATACAGGGTTGACTCTTGGCCAAACAACTGACTGTAGTCTGAAGAACGAAAATCCAGGGATCTCATCTCATCATATGGGTGGTCTTCCTTTGGAAAATGATGTTCCTGCAAAAGTACCGTTGGTTGGCATGGAAGCTTTGGAGGATACAGGGTTGACAGGAATTGGGAACTTTGTAAAATGTGAGTCCTCTATGCCAAAGTCATCCTCTCCAGTGGGCGAGGTGGCTTTGCCAAGTGGTTCAAAATCCTTATTCAAGGCCAATGTATCTGGTTCTAGTGCTTCTATTGAGAAGGCTATGACTAGAAGGTATGCTCCTAAAAGAAAATTTTCAGCTGTCAGAGACTTCCCCCCTTTATGCGGACGCAATGCTCCTCGTCTCAGCAAGGGTGAGCATCTAAAGGAGATCTCTTTGAACAACAAGATACCGAGTCAACAGAACTTGGCTGTAGATGACAATCCATTGGAAAAAATATCTGCCACCGATGTGCAGGAGAAGGATAATAACATTCAAGGTGAAAATGTGTGCAAGAGAAAGCTTGTGGGTGTAGCTAAAGCTGATCCTGAAAGGAGTGCTACAAAGAAAGTGAAGAAGATGGATGCATTTGAACTACCTCAAGAAAGTAAGCATGAAGTTGAAATATATTCCAAGGCAGTTGTCAAAGAGGAAAATAAGGATGCTGTACAGGACCTACAGGTTGAGGGAACGTCAGGGCTAGCGATTATGGTTTTACCAGAAGTCCAAAGTCCTGAGGCAAAGCCTTTGGATATGTCTATGTGTCAGTATAATTTGAAAGGAGATTTTAGTGGATTGCAGGATTCACCAGACAGGAAAGTGGCGCAAGGGTTGGTGTCTAAATCAGAATGTCCTCAGAGGCCTGACAAAGCTTCTTCCAAATATAAAATGATTGGTGTTAAAAATGAAAGGGAGGGAAAGAAAGCTGGTTGTTTTGCACACCTTGACAGGTCTAAAGCTGCTTTGAAGAGTAAAGATGCACCAAGTCATTCTGGGAAGAAGCCATTGAAAAAGGAAAGAGAAAATGCTGCTTCTGGCTTACAATTAGTAGTTTTTGGAAACAAGGATTCTCTTGACTCTGATGAAAACATGGAAGACTTTCAAGCTGTCCCCAAATCACATTGTTTCAATGTAAATGTTCCTCCTTTTGGTCATGGTAAATTTGGTGGTAATGAGAATGACTCAACCGTGACCCGAAATAAAGTGAGGGAAACATTACGCTTGTTTCAAGTTGTTTCTAGAAAGCTTTTGCAGCAACTAGAAGGTAAGTCGAAAGAGCGAGCAAATATTTCCAAGAGGATTGACTTACAAGCGGCAAAGATCCTTAAGGAGAAAGGGAAATATGTTAACACAGGCAAGCAAATCTTGGGATGTGTCCCTGGGGTTGAAGTTGGTGATGAATTTCAGTATAGGGTGGAGCTTAATATGATTGGCCTTCATCGCCCGATTCAGGGTGGTATAGATTATGTGAAGCACGGTGGTAAGATCCTTGCAACTAGTATTGTTGCATCAGGGGGTTATGCCGATGAGCTGGATAATTCGGATGTCTTGATATATACCGGGCAGGGTGGAAATGTGATGAGCACTGCTAAACAACCTGAAGATCAGAAGCTTGAGCGGGGAAATCTTGCTTTGAAGAACAGTAGTGAGGAAAAGAATCCTGTTAGGGTGATACGTGGCTATGAATCGAGAGATGGAAGGCCTAAGACATTGGTTTATGATGGACAATATCTGGTTGATTCGTATTGGCAGGATATCGGGCCACATGGGAAGCTGGTTTATAAGTTTCGTCTGCGAAGAATCCCAGGTCAGTGTGAGCTTCCTTTGAAAGAAGTGAAGAAATCTAAAAAGTTCAAAACAAGAGAAGGTCTATGTGTTGATGATATTTCTCATGGGAAAGAGCGGATTCCAGTCTGTGCTGTGAACACTGTAGATGATGAGAAACCCCCGCCATTTAAATACATAACTAGCATGATATATCGGTATTGCAAACTCAATCGTCCTGAAGGATGTGATTGTACTGATGGATGCTCTGACTTGCAGAAATGTTCTTGTGTTGTAAACAACGGGGGAGAGATCCCATTCAATCATAATGGTGCTATTGTAGAAGCAAAGCCTCTAGTCTATGAGTGTGGACCATCTTGCAAGTGCCCTTCTACATGCCATAATAGAGTCAGTCAACTCGGCATAAAGTTTCAACTTGAAATTTTTAAAACCAGTACAAGGGGATGGGGTGTGAGATCCCTAAATTCCATTCCTTCAGGAAGTTTTATCTGCGAGTATATAGGAGAACTTCTTGAAGACAAGGAAGCTGAACAAAGAACTGGTAATGATGAGTATCTTTTTGATATTGGAAATAACTTCAGCAATAGTACTCTCTGGGGTGGACTTTCAACACTTATGCCTAATGCACAGTCAGGGTCTCTTGAAGTTGTGAAGGATGGCAGCTTCACCATTGATGCCGCCCAGTATGGTAATGTGGGGAGATTCATCAACCATAGTTGCTCCCCTAATCTTTATGCCCAGAATGTCCTTTATGATCATGATGATGAAAGGATGCCTCACATAATGTTTTTTGCTGCTGAGAACATTCCTCCACTGCAGGAGCTAACTTACGATTATAATTACCAGATCGATCAAGTCTTCGATTCATATGGCAATATTAAAAGGAAGGACTGCTATTGTGGCTCTGTGGAATGTAGCGGTAGGATGTATTGA 3180 0.4208 MAASVNIGHSEEFSGKRSMENGDCTSLTRSMYKRRKVSAIRDFPEGCGPLASSVVPVLQVDISSANGTTVDDKNGDHSGDDTVRTSNCKADSQHSEFKKDSFLTESLRQTIDCSLKNENLVVASHHVNGLSLANDDSAEEPMVGMEALKDTGLTLGQTTDCSLKNENPGISSHHMGGLPLENDVPAKVPLVGMEALEDTGLTGIGNFVKCESSMPKSSSPVGEVALPSGSKSLFKANVSGSSASIEKAMTRRYAPKRKFSAVRDFPPLCGRNAPRLSKGEHLKEISLNNKIPSQQNLAVDDNPLEKISATDVQEKDNNIQGENVCKRKLVGVAKADPERSATKKVKKMDAFELPQESKHEVEIYSKAVVKEENKDAVQDLQVEGTSGLAIMVLPEVQSPEAKPLDMSMCQYNLKGDFSGLQDSPDRKVAQGLVSKSECPQRPDKASSKYKMIGVKNEREGKKAGCFAHLDRSKAALKSKDAPSHSGKKPLKKERENAASGLQLVVFGNKDSLDSDENMEDFQAVPKSHCFNVNVPPFGHGKFGGNENDSTVTRNKVRETLRLFQVVSRKLLQQLEGKSKERANISKRIDLQAAKILKEKGKYVNTGKQILGCVPGVEVGDEFQYRVELNMIGLHRPIQGGIDYVKHGGKILATSIVASGGYADELDNSDVLIYTGQGGNVMSTAKQPEDQKLERGNLALKNSSEEKNPVRVIRGYESRDGRPKTLVYDGQYLVDSYWQDIGPHGKLVYKFRLRRIPGQCELPLKEVKKSKKFKTREGLCVDDISHGKERIPVCAVNTVDDEKPPPFKYITSMIYRYCKLNRPEGCDCTDGCSDLQKCSCVVNNGGEIPFNHNGAIVEAKPLVYECGPSCKCPSTCHNRVSQLGIKFQLEIFKTSTRGWGVRSLNSIPSGSFICEYIGELLEDKEAEQRTGNDEYLFDIGNNFSNSTLWGGLSTLMPNAQSGSLEVVKDGSFTIDAAQYGNVGRFINHSCSPNLYAQNVLYDHDDERMPHIMFFAAENIPPLQELTYDYNYQIDQVFDSYGNIKRKDCYCGSVECSGRMY 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0238 1059 SMART PostSET_3 1043 1059 IPR003616 -
Lal15g0238 1059 ProSiteProfiles SET domain profile. 886 1029 IPR001214 GO:0005515
Lal15g0238 1059 ProSiteProfiles Post-SET domain profile. 1043 1059 IPR003616 -
Lal15g0238 1059 Gene3D - 592 774 IPR036987 -
Lal15g0238 1059 Gene3D SET domain 775 1059 IPR046341 -
Lal15g0238 1059 SMART preset_2 780 870 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal15g0238 1059 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 522 1058 - -
Lal15g0238 1059 SUPERFAMILY PUA domain-like 592 767 IPR015947 -
Lal15g0238 1059 ProSiteProfiles Pre-SET domain profile. 823 883 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal15g0238 1059 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 457 1059 IPR025794 GO:0016571
Lal15g0238 1059 Pfam SAD/SRA domain 610 758 IPR003105 -
Lal15g0238 1059 SMART set_7 886 1035 IPR001214 GO:0005515
Lal15g0238 1059 SUPERFAMILY SET domain 770 1036 IPR046341 -
Lal15g0238 1059 MobiDBLite consensus disorder prediction 474 495 - -
Lal15g0238 1059 Pfam SET domain 897 1029 IPR001214 GO:0005515
Lal15g0238 1059 MobiDBLite consensus disorder prediction 1 24 - -
Lal15g0238 1059 MobiDBLite consensus disorder prediction 66 87 - -
Lal15g0238 1059 CDD SET_AtSUVH-like 804 1030 - -
Lal15g0238 1059 Pfam Pre-SET motif 783 878 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal15g0238 1059 SMART G9a_1 606 758 IPR003105 -
Lal15g0238 1059 ProSiteProfiles YDG domain profile. 611 754 IPR003105 -
Lal15g0238 1059 MobiDBLite consensus disorder prediction 428 447 - -
Lal15g0238 1059 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 522 1058 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0238 Lal-Chr15 1628834 1636581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0238 553 1056 Su(var)3-9 homologs AT5G04940 42.095 3.16e-115 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal15g0238 SAD_SRA 2.3e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0238 K11420 - gmx:100803378 1301.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0304 16 1832372 1834291 Lal15g0238 15 1628834 1636581 LSH
Lal15g0238 15 1628834 1636581 Lal23g1243 23 13600921 13604115 LSH