Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0237 ATGAAACTTAATCTTAGGCACCAACTTGGCCTTGTCTGTGTCATAGTGCTCTTCCCTGCCCTGCATACATCTCAGGACTCTTTTACATGTTCTAGAGCAACCTATTATGGTAGCCCATATTGCTATGGAAATCCAAGGGGTGCTTGTGGCTTTGGCGAAGAAGGAAAGATAGTAAACGATGGCAATGTCGCAGGAGTGTCTTGGCTATGGAAGAATGGATCAGGCTGTGGTGCATGCTATCAGGTTAGGTGCAAAGTACCACAATACTGTGATGACTATGGAGCATTGGTGGTGGTAACAGATTATGGTGTAGGAGACAGAACAGACTTCATCATGAGTCCACATGGCTATTCAAGCTTGGGAAAAAATGCAGATGCATCTTCAGAGCTTTTCAAATATGGTGTGGTGGATGTTGAATACAAAAGGGTTCCATGTGGATACAGTGGCTATAACCTCATAGTTAAGGTCCACCAGCATAGCAAAAACCCTCACTACTTAGCCATTCTCATTCTGTATGTTGGTGGAACATATGACATAGCTGCTGTTGAGTTGTGGCAGGAAGAGTGCCAAGAATGGAGACCAATGCGTAGGGCTTTTGGGGCAGTGTTTGACTCTGCTAACCTGCCAAAGAGTGACATCAAGCTGAGGTTCCAAGTAAGTGGAAGTGCAGGGTTGTATTGGGTAGAGTCCAAGAATGTAATCCCTTGTGAATGGACACCAGGAGCTGTTTATGACACACAAATTCAGCTTCATTAA 756 0.4458 MKLNLRHQLGLVCVIVLFPALHTSQDSFTCSRATYYGSPYCYGNPRGACGFGEEGKIVNDGNVAGVSWLWKNGSGCGACYQVRCKVPQYCDDYGALVVVTDYGVGDRTDFIMSPHGYSSLGKNADASSELFKYGVVDVEYKRVPCGYSGYNLIVKVHQHSKNPHYLAILILYVGGTYDIAAVELWQEECQEWRPMRRAFGAVFDSANLPKSDIKLRFQVSGSAGLYWVESKNVIPCEWTPGAVYDTQIQLH 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0237 251 Pfam Expansin C-terminal domain 154 235 IPR007117 -
Lal15g0237 251 SUPERFAMILY PHL pollen allergen 151 245 IPR036749 -
Lal15g0237 251 SUPERFAMILY Barwin-like endoglucanases 13 149 IPR036908 -
Lal15g0237 251 Gene3D - 19 145 IPR036908 -
Lal15g0237 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Lal15g0237 251 Gene3D - 147 251 IPR036749 -
Lal15g0237 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Lal15g0237 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Lal15g0237 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Lal15g0237 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Lal15g0237 251 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Lal15g0237 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Lal15g0237 251 PANTHER EXPANSIN-B3 4 250 - -
Lal15g0237 251 Pfam Lytic transglycolase 63 140 IPR009009 -
Lal15g0237 251 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0237 Lal-Chr15 1628831 1630814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0237 9 250 Expansin Gene Family AT4G17030 58.848 1.17e-102 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0237 - - gmx:100802855 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0237 15 1628831 1630814 Lal23g0748 23 10071469 10073664 PCT
Lal23g0748 23 10071469 10073664 Lal15g0237 15 1628831 1630814 PCT