Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0234 ATGCATTGTGTTTCAGCTAGAACTCGTTCTAAACGAGCCGTAAATGATAACATCCCTGTGAAACATAGCACAAAAACCAACAACAACCCTGTTTCTGATTTAGAGGTTGTTGGGCTCAGTTCTGATGAAGAATATGAAACCATCGTTGATGATTTTGTAGAAGAGGTCACTGAAACTAGTGATTCTGATTTTAATGCAATGGAGAATGACAATGATGATGTTTTGGTTGTCTCAGATATTGAGAAAGAGGATAATGAGGTGCATATTGCAAAGGAGGGTAACAAGGGAAGACCAAAAGGAAAGAAGGGTGAGAGTGATGTTGAAGGAGTAAGGAGGAGGAAAGTTTATGGGCTTGATATTTTAATTGATGAGAATAATAGCGAGGAGAAAAAGTGTCCGGCACAAAGGACTCGCTCCCATTTTTGTTCTAACAATAAGAAGAAAAACAAGTTGAAGTTAGGGACTATTGCTCAACCAATATGCATTGATGATGATGAGAGTGAGGAAGAAAAGGTAAGTGATTTTGATGATCACACTCAAGAGAAGGAGGCAAGTGGTTCAGAAGATGATGAAGAAGAAGTAAGTGGGTCTGAATCTGATGAACAATACTCTAGTGGTTGCAAGAGAAAAGGCCATGCATGTGTGCACAACAAAGGGAAAAAGCTCAAAAAACAAGGTTTTCACATTCATCAGATTTTGAAGGATTCTATTTATGGGAAAGAGGAGGAACCAAACCCTTGTACTGATTTGCCAACTAAGTTTTCAATTTTACATGATGGTCCAAAAGAAGCAGAGAAATCAGAAGAAGAAGAATTAGAACTAATTTGGGCCGAGATGGAACATGGTCTTTATGATGCTCCTGATTCTTGTGTTAGTGATCACACGAGGGAATCCTCTGCACTCCCAAACAGGAAACAAATCTCATCCAAGTTTACTTTTTTGCATAAGGATCCAAAAGAAATAAAGAATGCAGAAGAAGGAAAAGAATTAGAACCAATTTGGGCTGAGATGGAGCGTGCTGGTCTTGATGATACTCCTAAGTCTTGTGTTACTGATCACAAGAGGGAAGCCTCTAAACTACCAAAGAAGAAACACATCTCACACACGTCTTCTTTTTTACATAAGGATCCAAAAGCAACAAGGAAATCAGAAGAAGAAAATGGATTAGAACCAATTTGGACTGAGATTGAATGTGGTCTTAATGATACTCCTGATTCTTGGGTTAGTGGTCACAACAGAGAAGCTTCTGTATACCCGAGGAAGAAACACACTCGGGACGATCCAAGAGATATTGGTGTGCTTAATAAGAATGTTCTTCAGGATTATATCTATGGCGAGGGAGAGGTGCTTATGGAGGAGCCAACTAAAAATGAACTTAATCCAATCAAGGATCTACTGCCTGTGTTTCCTTTTATGTGTGTGGAACCAAAACCACCAGAGAAATCGGATGAAGAGAAAGAATTAGATGCACTGTGGGCCCAGTTGGACCTTGCTCTTTATGCCGCGCAGGAAAACTCTACTCCTGTTTCTCAGGTTCAAAATAATATCGATTCTGATAATGATCAATATCCAAATGGTGAAGTTAGCATAGCTACTCTTTGTCGTCAAGGAAAGCATCATCTTAGGCTTAATGAGGAGGTTGGACTTGTATGTGTATACTGCTTACATGTTGGATTGGATATCAAGGATTATCTACCTCCCTTTTGTGAAAATCCATTTGGAAATTCAAACAGGAGAGACTCTTACACTGAGAACCATGCACACCACTCTGTCTTTAATGATTTTCAAGATCATGTTACTGGATATGATGATGATAACCTATGTAATTATACCGGGACAGTGTGGACTATAATTCCAGGAGTGAAGAAGAATATGTATCCTCATCAGTGTGAAGCTTTTGAGTTTCTTTGGAAGAATTTAGCTGGAGGGATTTTTCTTGATAAGTTGAAAGAACAAGAAGATTTTCATGGTGGTGGTGGATGCATTATATCTCATGCTCCTGGGACTGGGAAAACCCGTCTGACTATTACATTTCTCCAGACATACATGAAGTTATATCCAAAATGCAGACCATTGATTATTGCTCCTAAAGGTATGCTTCTTACATGGGAAGAGGAGTTTAGAAAGTGGAATGTTGACATTCCATTTCATAATTTGAACAGTCCTGACTACTCTGGCAAGGAGAGTAAGGTAGCTATGAATCTCGCGACGGATTCTGATTGTAATATTTCAAGACGGTTAGTGAAGTTATATTCCTGGAAGTATAATAAAAGCATATTGGGAATTAGCTACAAATTGTTTGAGCAACTTACTAAGCAGAACTGTCGTGCAAAGAAGTTAAGAAAATTCCTTCTTGAACATCCTGGTTTATTAGTTCTTGACGAGGGACACACTCCTCGCAATTCCCGAAGTCTTCTATGGAAAGCTGTCTCACAATGCCGGACAAAAAAGCGCATCATCCTCTCTGGAACTCCCTTTCAGAATAATTTTCGTGAGTTGTACAACACACTCTACTTGGCAAGGCCTATGTTTGCTTATTGGAATCCATCTGGAGGCAAAAACATATTCAACGAGAAGCTAGGGCATCCAAGAAAGGAATATGTAGGGAAATGGAAGAATCTGACCAAATCATTCGGCAAGGTTACTGATGATAGTAAAAAATTGAAGATAGCGAAAGAGGTCAGAAACATGATCCATTCTTTTGTTCATGTACACAAAGGAACAATACTGCAAGAGAGTCTTCCTGGGATGAAGGAGTTTGTAGTTATATTAAAGCCAACCCAGTTGCAGAAAAAACTTCTTGAGGATATTCAGAGGAAAAAGAACAGACTCTGCCATGGAAGCCAGGCATCATCGAATGTGATGAAAATAGAATATGAGGAATCTGTAACTGCTGTTCATCCTGCTCTGTTTGATTTATCTGAAGGCAATGGGAAGTATGAAAGGCTTAAATTGAATCCGGAGGAAAGTTCCAAAACAAATTTTTTAATGGAACTCATCAGGCTCAGTGAGCTTGTGAATGAAAAGGTCTTGGTTTTCTGCCAGTTTATTAATCCCTTGAAGCTTATGGCAAGCCAGCTTAAACATCATTTTAGTTGGACAGAAGGAAGAGAGGTGTTACATATGCATGGACAAGTCGATGCGAAGTTGCGTCAAGCTTCCATTAAATCTTTCAACAATCCCAACAGCAAAGTAAGGGTAATGCTTGCATCAACCAAGGCTTGCTATGAAGGTATCAGTTTAGTTGGTGCATCAAGGGTTGTTTTACTGGATGTTGTATGGAATCCTTCAGTGGAGAGGCAAGCTATAAGCCGTGCTTATCGACTCGGGCAGAAGAAATATGTGTACACTTACCATCTGATTACAGCAGGAACGAGGGAAGAAGAAAAAAGCAGTCGTCAAGCTGAGAAAGATCAGTTATCAGAGTTGATGTTCTTTACTTCTGATTTGGCTCAGCATCCTGAAAAAAATTCATCGGCAGAATTGCAAGATCAAATTTTAGAAGAGATGGTTCAACAAGAAAAGTTTAGGGAGGTGTTTGAAAAAGTAGCCATTAAGAAACATACACTACTTTGA 3576 0.3921 MHCVSARTRSKRAVNDNIPVKHSTKTNNNPVSDLEVVGLSSDEEYETIVDDFVEEVTETSDSDFNAMENDNDDVLVVSDIEKEDNEVHIAKEGNKGRPKGKKGESDVEGVRRRKVYGLDILIDENNSEEKKCPAQRTRSHFCSNNKKKNKLKLGTIAQPICIDDDESEEEKVSDFDDHTQEKEASGSEDDEEEVSGSESDEQYSSGCKRKGHACVHNKGKKLKKQGFHIHQILKDSIYGKEEEPNPCTDLPTKFSILHDGPKEAEKSEEEELELIWAEMEHGLYDAPDSCVSDHTRESSALPNRKQISSKFTFLHKDPKEIKNAEEGKELEPIWAEMERAGLDDTPKSCVTDHKREASKLPKKKHISHTSSFLHKDPKATRKSEEENGLEPIWTEIECGLNDTPDSWVSGHNREASVYPRKKHTRDDPRDIGVLNKNVLQDYIYGEGEVLMEEPTKNELNPIKDLLPVFPFMCVEPKPPEKSDEEKELDALWAQLDLALYAAQENSTPVSQVQNNIDSDNDQYPNGEVSIATLCRQGKHHLRLNEEVGLVCVYCLHVGLDIKDYLPPFCENPFGNSNRRDSYTENHAHHSVFNDFQDHVTGYDDDNLCNYTGTVWTIIPGVKKNMYPHQCEAFEFLWKNLAGGIFLDKLKEQEDFHGGGGCIISHAPGTGKTRLTITFLQTYMKLYPKCRPLIIAPKGMLLTWEEEFRKWNVDIPFHNLNSPDYSGKESKVAMNLATDSDCNISRRLVKLYSWKYNKSILGISYKLFEQLTKQNCRAKKLRKFLLEHPGLLVLDEGHTPRNSRSLLWKAVSQCRTKKRIILSGTPFQNNFRELYNTLYLARPMFAYWNPSGGKNIFNEKLGHPRKEYVGKWKNLTKSFGKVTDDSKKLKIAKEVRNMIHSFVHVHKGTILQESLPGMKEFVVILKPTQLQKKLLEDIQRKKNRLCHGSQASSNVMKIEYEESVTAVHPALFDLSEGNGKYERLKLNPEESSKTNFLMELIRLSELVNEKVLVFCQFINPLKLMASQLKHHFSWTEGREVLHMHGQVDAKLRQASIKSFNNPNSKVRVMLASTKACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKYVYTYHLITAGTREEEKSSRQAEKDQLSELMFFTSDLAQHPEKNSSAELQDQILEEMVQQEKFREVFEKVAIKKHTLL 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0234 1191 MobiDBLite consensus disorder prediction 162 211 - -
Lal15g0234 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 858 IPR027417 -
Lal15g0234 1191 MobiDBLite consensus disorder prediction 1 30 - -
Lal15g0234 1191 MobiDBLite consensus disorder prediction 370 386 - -
Lal15g0234 1191 SMART ultradead3 621 856 IPR014001 -
Lal15g0234 1191 CDD SF2_C_SNF 990 1121 - -
Lal15g0234 1191 Pfam Helicase conserved C-terminal domain 992 1110 IPR001650 -
Lal15g0234 1191 Gene3D - 915 1189 IPR027417 -
Lal15g0234 1191 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 455 1186 - -
Lal15g0234 1191 SMART helicmild6 1021 1110 IPR001650 -
Lal15g0234 1191 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 652 843 IPR014001 -
Lal15g0234 1191 MobiDBLite consensus disorder prediction 345 386 - -
Lal15g0234 1191 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 455 1186 IPR044567 GO:0080188
Lal15g0234 1191 Pfam SNF2-related domain 656 960 IPR000330 GO:0005524|GO:0140658
Lal15g0234 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 786 1145 IPR027417 -
Lal15g0234 1191 Gene3D - 604 883 IPR038718 -
Lal15g0234 1191 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 998 1151 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0234 Lal-Chr15 1613451 1618822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0234 986 1140 RAD5 or RAD16-like Gene Family AT5G43530 36.250 8.77e-17 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal15g0234 SNF2_N 5.3e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0234 K10875 - jre:109003751 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0234 15 1613451 1618822 Lal15g0234 15 1613451 1618822 ECH