Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0228 ATGGCTCTCTACCTTTTGTGTCTTGTGCTTTCTACCACCTTGCTTTTCAATTTGTTGCAAACTCTAGCTGATACTTCATGCATCGATTGTTTTGTTCAGTCTCGGGCAACATATTACCCAAATTCTGCAGATAATGGAACAGATGTAGGTGCATGTGGATTTGGTTCCTTTGGTGCTACACTAAATGGAGGGGACGTTTCAGCTGCATCCAATCTTTATAGAGACGGTGTTGGATGTGGTGCTTGTTACCAGGTGAGGTGTACCAATAGTGCCTTTTGCTCAGACAAGGGTTCCACTGTTGTTATAACAGACCAAGGCTCAAGTGATAACACTGATTTCATTCTTAGTCAACATGCCTTTGGTAGGATGGCTCAAACCACTGATGCAACTGCTTCTTTATTAGCCCTTGGAGTGGTTGGTATTGAATACAGAAGAGTTGCCTGCAGCTACCCAAACAAAAACATAACATTCAAAATAGATGAGAGCAGTGGCAACCCTCATTACTTGGCTTTTGTAATAAGGTATCAACAAGGAAGGAGAGACATAACTGCAGTGCAGCTGTGTGAGACTCAGAACTTTGTCTGCAAATTACTGGATCGGAGTCATGGAGCAGTGTGGACTACAACACCTGCACCGAGTGGACCTCTGTCTGTGAGGATGTTGTTTAGTGATGAAGAAGGGGGAGAAGAAACATGGGTTATTCCTGTTAATGACATACCCCAAGATTGGAAGGCTGGAGATATATATGATTCAGGGGTACAAGTGAACCAATAG 774 0.4328 MALYLLCLVLSTTLLFNLLQTLADTSCIDCFVQSRATYYPNSADNGTDVGACGFGSFGATLNGGDVSAASNLYRDGVGCGACYQVRCTNSAFCSDKGSTVVITDQGSSDNTDFILSQHAFGRMAQTTDATASLLALGVVGIEYRRVACSYPNKNITFKIDESSGNPHYLAFVIRYQQGRRDITAVQLCETQNFVCKLLDRSHGAVWTTTPAPSGPLSVRMLFSDEEGGEETWVIPVNDIPQDWKAGDIYDSGVQVNQ 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0228 257 Gene3D - 21 148 IPR036908 -
Lal15g0228 257 Pfam Expansin C-terminal domain 155 235 IPR007117 -
Lal15g0228 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 153 IPR007112 -
Lal15g0228 257 PANTHER EXPANSIN-B3 7 256 - -
Lal15g0228 257 Pfam Lytic transglycolase 69 135 IPR009009 -
Lal15g0228 257 Gene3D - 149 252 IPR036749 -
Lal15g0228 257 SUPERFAMILY Barwin-like endoglucanases 21 152 IPR036908 -
Lal15g0228 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Lal15g0228 257 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Lal15g0228 257 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Lal15g0228 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 251 IPR007117 -
Lal15g0228 257 PANTHER EXPANSIN-LIKE B1 7 256 - -
Lal15g0228 257 SUPERFAMILY PHL pollen allergen 153 251 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0228 Lal-Chr15 1538679 1540558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0228 14 253 Expansin Gene Family AT4G17030 42.975 2.61e-58 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0228 - - gmx:100794009 429.483