Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0223 ATGAGTATGAGGGAGCTGAGAGAGGATGCTAAACCAGCTATGGTTTGCACTGCTAATGATATACAAGGATGGACAGATTTTCCAAAGGGACTTAAGGTTCTTCTCCTTGATGGAGATAGAAGTTCTGCTGCTGAGACAAAAGCAAAGCTTGAGGCTATGGACTATAATGTTTCTGCCTTTGATGACGAAGATGCAGCTTTATCAGCAATATCAAGTAGGTCTGAAGATTTCCACATTGCCATAGTGGAGGTGAGTGTGAGTACAAGCAGTAGCCAGGGAGGTTTCAAGTTTCTTCAGAATGCCAAGGACTTGCCAACCATCATGACTTCAAACAATCAGTGCTTGAGCACCATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTCCAAAATAAACCACTCTCGGAGGATAAGCTCAGAAATATCTGGCAGCATGTGGTTCATAAGGCATTCAGTGATGGGGAAAGTGTCTTGCCTGATTCACTAAAACCAGTCAAAAAATCTGTAGAATCCTTGTTGCAGCCCCAAACAGAAAATGGACAACATGAAAGTAAAATATCGATAGAATTAGATAACGTGTCCAGGTTAAGTGATGGTGACTATGATCACTCTGCTGGAAGTGATAAATATCCAGCTCCTTCAACCCCACAATTAAAACAAGGAGAAAGATTACTTGACGGTGGCGATTGCCAAGAGCAGAGTAACTATTTCACAGAAAAAGAAAGTGTGGAACTTGATGGAGACTCTAAATCTGTTGATACTTCATGTGAGAATTTGAACACTGAAGGTACAGCACGAACAAGGAAACCTGCAAAGGCTCTAATTAAGGGGGAAGAGGATTTTGCTGAATGCTGCAAGGGGGAGAGTGCTGTTTCTCTGAATCAGTGTCATAGAAAGTTTCTCAGCAAGGCAGGTGGTAATACTACATCTCCAAATAAAGCTGGTGTTCCAAGAGATTTTCGTGAGATTAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAAATTTGTGCAGGCAGTGGAACAACTAGGCATTGATCAAGCCATTCCCTCTAGAATATTGGAGCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGCTTTTTGGTGAACAGAAATATAGATTACAGAAGAGACAAACCCTTCCCAGAGAAGAAAATCGAAGATGGACAAATCAAAAGGATCCTATGCAAAGGAACTATTATGTGCAAAGACCAATTATGGCATATCCTCCATATCATTCCAACCACACCATTTCTCCAGTTCCTGTATATCCTATGTTGGGACAACCTGGCAGCCAAACAGATGGCGTCAAGGTTTGGGGCCCTCCTGGTTATCCCATGTGGCAGCCTTCACAAAGCTGGCATTGGAAGCCTTTTCCAGGGGTGCATGCGGATACATGGGGTTGCCCAGTGTTGCCACCTCCACAAGCTCCTTGTTTTTCCTACACTCAAAATATGGCTGGGTTGCACAATGCCAAAGCAGTGGATTATAGATTTGGCACACCACAAACTTCTTTTGAGCATCATACGGCAATGCAGGCAGAGGAGGTTGTTGATAAGGTGGTGAATGAGGCAATGAGCAAGCCATGGCTGCCCTTGCCTTTAGGCCTCAAACCGCCTTCGGCGGATAGTGTGTTGGCTGAGCTCTCTAAGCAAGGCATGTCCAGCATCCCTCTTGTCAATAAAGGTGTTAAACCCCATTCAAGTGTACAAAGATAA 1755 0.4399 MSMRELREDAKPAMVCTANDIQGWTDFPKGLKVLLLDGDRSSAAETKAKLEAMDYNVSAFDDEDAALSAISSRSEDFHIAIVEVSVSTSSSQGGFKFLQNAKDLPTIMTSNNQCLSTMMKCIALGAVEFQNKPLSEDKLRNIWQHVVHKAFSDGESVLPDSLKPVKKSVESLLQPQTENGQHESKISIELDNVSRLSDGDYDHSAGSDKYPAPSTPQLKQGERLLDGGDCQEQSNYFTEKESVELDGDSKSVDTSCENLNTEGTARTRKPAKALIKGEEDFAECCKGESAVSLNQCHRKFLSKAGGNTTSPNKAGVPRDFREIKANRKKMKVDWTPELHKKFVQAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQLFGEQKYRLQKRQTLPREENRRWTNQKDPMQRNYYVQRPIMAYPPYHSNHTISPVPVYPMLGQPGSQTDGVKVWGPPGYPMWQPSQSWHWKPFPGVHADTWGCPVLPPPQAPCFSYTQNMAGLHNAKAVDYRFGTPQTSFEHHTAMQAEEVVDKVVNEAMSKPWLPLPLGLKPPSADSVLAELSKQGMSSIPLVNKGVKPHSSVQR 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0223 584 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 326 385 IPR017930 -
Lal15g0223 584 PANTHER TRANSCRIPTION ACTIVATOR GLK1 14 577 IPR044825 GO:0003700|GO:0045893
Lal15g0223 584 SUPERFAMILY CheY-like 29 149 IPR011006 -
Lal15g0223 584 Gene3D - 325 391 - -
Lal15g0223 584 Pfam Myb-like DNA-binding domain 332 378 IPR001005 -
Lal15g0223 584 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 14 577 - -
Lal15g0223 584 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 329 380 IPR006447 GO:0003677
Lal15g0223 584 SUPERFAMILY Homeodomain-like 328 380 IPR009057 -
Lal15g0223 584 Gene3D - 31 155 - -
Lal15g0223 584 ProSiteProfiles Response regulatory domain profile. 32 147 IPR001789 GO:0000160
Lal15g0223 584 MobiDBLite consensus disorder prediction 197 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0223 Lal-Chr15 1509276 1516380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0223 14 570 Response Regulator Gene Family AT4G18020 48.129 1.52e-135 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lal15g0223 Myb_DNA-binding 4.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0223 - - gmx:100784905 831.247