Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0220 ATGCCAGTTCCACTCGCCCCTTACCCTACAAACCCAGCTCCATATTCACCTCCAGTAAATGGTGCTCAAAGTCAACTTGTCTGTTCGGGCTGTAGAAGCCTTCTCATGTATCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCCCCTGGCACTGAAATGGCCCAGTTAGTTTGTGGAGGCTGTCACACTTTACTCATGTACATTCGCGGAGCGACAAGTGTCCAGTGCTCTTGTTGTCACACAATCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTGAACTGTGGGAACTGTAACATGCTACTCATGTACCAATATGGAGCAAGATCTGTGAAATGTGCAGTTTGCAGTTTTGTAACATCAGTTGGGGCCTCAGCAAACATCATTGAACAGAAACTTAGCACCTAA 438 0.4772 MPVPLAPYPTNPAPYSPPVNGAQSQLVCSGCRSLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTINLALEANQVAHVNCGNCNMLLMYQYGARSVKCAVCSFVTSVGASANIIEQKLST 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0220 145 Pfam LSD1 zinc finger 28 52 IPR005735 -
Lal15g0220 145 Pfam LSD1 zinc finger 67 91 IPR005735 -
Lal15g0220 145 Pfam LSD1 zinc finger 105 129 IPR005735 -
Lal15g0220 145 PANTHER PROTEIN LSD1 1 139 IPR040319 -
Lal15g0220 145 PANTHER PROTEIN LOL1 1 139 - -
Lal15g0220 145 SUPERFAMILY Multiheme cytochromes 28 126 IPR036280 -
Lal15g0220 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Lal15g0220 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 25 55 IPR005735 -
Lal15g0220 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 102 131 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0220 Lal-Chr15 1493005 1494973 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lal15g0220 zf-LSD1 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0220 - - tcc:18606063 266.929