Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0218 ATGGATTCTCGAGAACAACCGCCTCAGCACTCTAACGTCATGGTGGGACCCACTTCCTACCCTCCAAACACTACCCTACCCTCCACCATGGCCACCGCCACCACCGTCACCGCCCCATTCCCTTTCACCTCTATGCCTCACCACCACCCAACTGCTCCTTCTTCCTACGAGGACTCTTCCTCTTCAGCATTGAAGAAGAAGAGGGGCCGACCAAGGAAGTATTCACCTAATGCTGGTAACATTGCTTTGGGTTTAGCCCCCTCCACAGATCAGCACGTTTCTTCTCCTCCTCCTCCTCCCGGTGGCAGCGCTACGCCGTCGACTGAGCCTCTGGCCAAGAAGCATAGGGGAAGGCCACCTGGCTCCGGAAAGAAACAGCTTGACGCGCTTGGAGCTGGTGGTACTGGTTTTACTCCTCATGTAATTTTGGTGGAGCCTGGTGAGGACATTGCAGCAAAATTTGTGGAATTTTCTCAACAAGGACCTCGGACAGTTTGCATCCTTTCTGCTCGTGGTGCAATCAGCAATGTTACCCTTCGACAGTCAACAACATCTGGGTGTACTGTCACACATGAGGGCCTATTTGAAATTATTTCCCTCTCAAGTTCGGCACTGCCATCCGAAAAGAGTAGTGGTGATGGTAAAATGGATGGGTTGAGTGTGTCCCTTGCAGGGCCTGATGGACGAGTTTTGGGTGGCATAGTTGCTGGAATTCTCAAGGCAGCATCACAAGTACAGGTCATTGTGGGTAGCTTCATTGCCGAGCACAAAAAATCTAGATCAGACAACCTGAAATCTGGCCCTTCAGAACCATCACCCCAAACGTTAACTTCTGGTGCACCCGCAACTCCAACCAGTCCTACCTCTCAAGGGCCTTCATCCGATTCCTCTGATGACAATGATAATGGTCCTTCTAATAGGGGACCTGATCTCTACAATAATGCTACTCAGCCCATTCATAATATGCCGCTGCACCATCACCGGTTGTGGGCTCAGCAGTGA 1002 0.513 MDSREQPPQHSNVMVGPTSYPPNTTLPSTMATATTVTAPFPFTSMPHHHPTAPSSYEDSSSSALKKKRGRPRKYSPNAGNIALGLAPSTDQHVSSPPPPPGGSATPSTEPLAKKHRGRPPGSGKKQLDALGAGGTGFTPHVILVEPGEDIAAKFVEFSQQGPRTVCILSARGAISNVTLRQSTTSGCTVTHEGLFEIISLSSSALPSEKSSGDGKMDGLSVSLAGPDGRVLGGIVAGILKAASQVQVIVGSFIAEHKKSRSDNLKSGPSEPSPQTLTSGAPATPTSPTSQGPSSDSSDDNDNGPSNRGPDLYNNATQPIHNMPLHHHRLWAQQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0218 333 MobiDBLite consensus disorder prediction 1 41 - -
Lal15g0218 333 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 256 - -
Lal15g0218 333 MobiDBLite consensus disorder prediction 1 132 - -
Lal15g0218 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 304 IPR039605 GO:0003680
Lal15g0218 333 ProSiteProfiles PPC domain profile profile. 134 274 IPR005175 -
Lal15g0218 333 MobiDBLite consensus disorder prediction 258 320 - -
Lal15g0218 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 36 304 - -
Lal15g0218 333 Gene3D - 139 267 - -
Lal15g0218 333 MobiDBLite consensus disorder prediction 265 320 - -
Lal15g0218 333 Pfam Plants and Prokaryotes Conserved (PCC) domain 139 252 IPR005175 -
Lal15g0218 333 CDD DUF296 138 252 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0218 Lal-Chr15 1482052 1485015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0218 64 330 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 44.918 8.81e-64 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0218 - - lang:109331997 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0284 16 1692669 1697061 Lal15g0218 15 1482052 1485015 LSH
Lal15g0218 15 1482052 1485015 Lal23g0782 23 10341101 10344652 PCT
Lal23g0782 23 10341101 10344652 Lal15g0218 15 1482052 1485015 PCT