Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0207 ATGGGTAATGATCAAGATCATCCCACTTACTCTGGCCTTCATCTTGGTCTAGGGTTATCCTTGACTACCGATGAAACCACCATGGTTGATGATCATCTTTCTCTTCTTAACCCCACGCCAATGAAGCCTTATTTCTCAAGTTTCATTACCCAGGCTGAGCCATATTTAACGTTGGGTCTCTCAAGTACTGAGAGTTACCCCAACCAGCATGTGGCTAAGAATAAGATAGATGGGAATTACAAAGCATGTGGTGATGACCTTGTTGATTTGTCGGCTTCAGCTCACAGTGTTGCTTCTTCTTTCTCCGGTGGGAGGTTGATGAAGAGAGAGAGGGATCTTAGCTGTGAAGAGGTAGAGACAGAGGCAACAGAGAGGGTTTCTTCAAGAGTGAGTGATGAAGATGAAGACGCAACTAATGCTAGAAAGAAACTCAGGCTTACTAAACAACAATCTATGTTGCTCGAAGAGAGCTTCAAACAACATAGCACTCTCAATCCTAAACAGAAGCAAGCCTTAGCCAGACAACTACATCTAAGGCCTCGACAGGTTGAAGTGTGGTTCCAAAATCGTAGAGCCAGAACAAAGCTGAAGCAGACGGAGGTGGATTGCGAGTTCTTAAAGAAATGCTGTGAAACATTGACAGAGGAGAACAAGCGTCTAAAGAAGGAGTTGCAGACACTAAAACAGGCTCAGCCTATGTACATGGCTATGCCTGCAGCCACACTCTCTATGTGCCCTTCTTGTGAGAGAATCGTTGGTGATGGTGGTTCTAAGAAGAGCCCTTTCTCAATGGCTCCCAAGCCTCACTTCTATAATCCCTTCACCAATTATTCTGCGGCATGTTAA 846 0.448 MGNDQDHPTYSGLHLGLGLSLTTDETTMVDDHLSLLNPTPMKPYFSSFITQAEPYLTLGLSSTESYPNQHVAKNKIDGNYKACGDDLVDLSASAHSVASSFSGGRLMKRERDLSCEEVETEATERVSSRVSDEDEDATNARKKLRLTKQQSMLLEESFKQHSTLNPKQKQALARQLHLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENKRLKKELQTLKQAQPMYMAMPAATLSMCPSCERIVGDGGSKKSPFSMAPKPHFYNPFTNYSAAC 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0207 281 ProSitePatterns 'Homeobox' domain signature. 172 195 IPR017970 GO:0000981|GO:0006355
Lal15g0207 281 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 11 281 - -
Lal15g0207 281 MobiDBLite consensus disorder prediction 117 141 - -
Lal15g0207 281 SMART HOX_1 139 201 IPR001356 GO:0003677
Lal15g0207 281 CDD homeodomain 141 198 IPR001356 GO:0003677
Lal15g0207 281 Gene3D - 145 195 - -
Lal15g0207 281 SMART halz 197 237 IPR003106 GO:0006355|GO:0043565
Lal15g0207 281 SUPERFAMILY Homeodomain-like 132 198 IPR009057 -
Lal15g0207 281 Coils Coil 203 230 - -
Lal15g0207 281 PANTHER - 11 281 - -
Lal15g0207 281 ProSiteProfiles 'Homeobox' domain profile. 137 197 IPR001356 GO:0003677
Lal15g0207 281 Pfam Homeodomain 141 195 IPR001356 GO:0003677
Lal15g0207 281 Pfam Homeobox associated leucine zipper 197 229 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0207 Lal-Chr15 1433386 1434850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0207 6 281 Homeobox Transcription Factor Family AT4G37790 53.898 2.01e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal15g0207 Homeodomain 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0207 K09338 - gmx:100795135 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0840 16 5439779 5441903 Lal15g0207 15 1433386 1434850 LSH
Lal15g0207 15 1433386 1434850 Lal23g0790 23 10417104 10419774 PCT
Lal23g0790 23 10417104 10419774 Lal15g0207 15 1433386 1434850 PCT