Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0200 ATGCCAATGTATCAGCCTTGTAAGAGGGACATGGTTGTTGTTGGGTTTGAGGGTAGCGGTGATGGCCAGATTCTAGATCTGGAATCTGCAGTCAAAGACGGTGTTTTGGGTGGTGTTGACGGTGGTGTTGTGGGAAGTGGGGTTTGTGAGAAATTGGATCTGTCAAAAATGATTGAAGAGCTTGACTTGTGTGAAGTTCCCACTGTCTTCATTTGCCCAATCTCTCTTGAACCAATGCAAGACCCTGTTACCCTTTGCACTGGCCAAACCTATGAGAGGTCCAACATTCTCAAATGGTTCAATTTGGGGCACTTCACATGCCCCACCACAATGCAAGAGCTTTGGGATGATTCCATTACTCCAAACACCACCCTTTACCGTTTGATATACACTTGGTTTTCTCAGAAGTACTTGCTCATGAAGAAGAAATCAGAGGATGTGCAAGGACGGGCTTCGGAGCTTCTCGAGACGCTGAAGAAGGTTAAGGGTCAAGCTAGAGTTCAAGCACTCAAGGAGCTTCACCAGGTTGTGTCTGCTCATTCCACTGCCCGCAAGACGGTGATTGATCAAGGTGGAGTATCTATTATGTCCTCATTACTTGGTCCTTTTACTTCACATGCAGTTGGTTCTGAAGTCATTGGTATTCTTGTAAGTTTGGCACTTGATTCAGAATCCAAAAAGAATCTTATGCAGCCTGCTAAAATTTCATTGATGGTTGATATTTTGAATGAGGGTTCAATTGAGACTAAAATCAATTGCACAAGACTCATGGAAACCTTAATTGACGATAAGGATTTTCGGTCGGAGATTATCTCAAGCCATAGCCTGTTGGTTGGATTGATGAGGTTTGTGAAGGATAAGAGAAGAAGCAATGGAATCTGTCATGGACTAAGCCTTCTCAAAACAATATCTTTGCATCAAGAAGTTAGAATTTTGCTAGTTAGCATTGGGGCTGTTTCTCAATTAGTTGAATTGTTATCTGGTTTGGAGCCTGATTGTTTGGAATTAGCCCTTTGTGTTTTAGATTCATTGGCATCTATACCTGAAGGCAGACTTGCTTTGAAAGATTGTTCTAACACCATACCCATCATGGTGAAACTGTTGATGAGGATCTCAGAGAACTGCACCCAATATGCATTGTCAATTCTCTGGTCTGTGTGCAAGCTTGCACCTGAGGAATGCTCATCCATTGCTGTGGATGCAGGGCTTGCTGCAAAACTTCTCCTTGTTATTCAAAGTGGTTGCAATCCTGTATTGAAACAACAATCTGCTGAGCTTTTGAAGCTGTGTAGTTTAAATTATTCTGATACCATCTTCATTTCTAAGTGCAAGCTTACCAGAACCTTCCAATGA 1353 0.4235 MPMYQPCKRDMVVVGFEGSGDGQILDLESAVKDGVLGGVDGGVVGSGVCEKLDLSKMIEELDLCEVPTVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHFTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLMKKKSEDVQGRASELLETLKKVKGQARVQALKELHQVVSAHSTARKTVIDQGGVSIMSSLLGPFTSHAVGSEVIGILVSLALDSESKKNLMQPAKISLMVDILNEGSIETKINCTRLMETLIDDKDFRSEIISSHSLLVGLMRFVKDKRRSNGICHGLSLLKTISLHQEVRILLVSIGAVSQLVELLSGLEPDCLELALCVLDSLASIPEGRLALKDCSNTIPIMVKLLMRISENCTQYALSILWSVCKLAPEECSSIAVDAGLAAKLLLVIQSGCNPVLKQQSAELLKLCSLNYSDTIFISKCKLTRTFQ 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0200 450 SMART arm_5 180 218 IPR000225 GO:0005515
Lal15g0200 450 SMART arm_5 347 388 IPR000225 GO:0005515
Lal15g0200 450 SMART arm_5 306 346 IPR000225 GO:0005515
Lal15g0200 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 138 IPR013083 -
Lal15g0200 450 SUPERFAMILY RING/U-box 60 136 - -
Lal15g0200 450 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Lal15g0200 450 Pfam U-box domain 66 136 IPR003613 GO:0004842|GO:0016567
Lal15g0200 450 Gene3D - 139 441 IPR011989 -
Lal15g0200 450 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Lal15g0200 450 SUPERFAMILY ARM repeat 144 435 IPR016024 -
Lal15g0200 450 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 39 449 - -
Lal15g0200 450 PANTHER WDSAM1 PROTEIN 39 449 IPR045185 GO:0061630
Lal15g0200 450 CDD RING-Ubox_PUB 70 112 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0200 Lal-Chr15 1377145 1378497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0200 1 450 U-box Gene Family AT3G49810 73.333 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0200 - - gmx:100779827 778.474