Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0197 ATGGGTGCTCCAAAGCAGAAATGGACCGCAGAAGAAGAAGCAGCGCTTAAAGCTGGAGTAGTCAAGCATGGTGCAGGAAAATGGCGCACTATACTTACAGACCCAGAATTCAGTTCCGTTTTGCACATGCGTTCTAATGTAGATCTCAAGGACAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCAGGCAGAAGGCAAAGCTTGCCCTTAAAAAGAACCTACCGACCCCCAAAATCGACAATAACCACTCGAGTGCTATAGTTCAACGTGATGGACAACTTGCTGTTACTAAGCCTCTGGTAGTTTTTGGTGGATCATGTCCGAAGTCAAAAGAACAAATATCAAGGTTGGATACTCTTATATTAGAGTCTATTATCAAGTTGAAGGAGCCAAAGGGTTCTGACAGGGCTGCCATTGCTGCTTATATAGAGGATCAATACTGCTCGCCGCCGAACCTCGAAAAGTTACTATCAACAAAATTGAAGCATATGGTGGAAAGTGGCAAATTAATGAAGGTAAAGCGTAAGTACATGATTCCGTCAAACCTATCAAGCTCCGAGAAAAGAAGGTGCTCTTCCTCCTTACTCCTTGAAGGGAGGTCCAAAGATTCACCTAAAACAGAGAAGACTGGTGTCAACAACCTGTCAAAATCCCAAATTGATGCAGAGCTATTAAAAATTAAGGGCATGACATCTCAAGAAGTGGCAGCCGCGGCTGCAAAAGCAGTTGCAGAGGCAGAAGCTGCCATTGCTGAGGCAGAGGCAGCAGCTAGGGTGGCAGAGGCAGCAGAAGCTGAAGCAGAGGCTGCACAAGTTTTTGCAAAGGCAGTAAAGAGAGCATTTAAATGCAAAAAACGTTCTCCTTGA 873 0.4467 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSVLHMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPTPKIDNNHSSAIVQRDGQLAVTKPLVVFGGSCPKSKEQISRLDTLILESIIKLKEPKGSDRAAIAAYIEDQYCSPPNLEKLLSTKLKHMVESGKLMKVKRKYMIPSNLSSSEKRRCSSSLLLEGRSKDSPKTEKTGVNNLSKSQIDAELLKIKGMTSQEVAAAAAKAVAEAEAAIAEAEAAARVAEAAEAEAEAAQVFAKAVKRAFKCKKRSP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0197 290 SMART h15plus2 113 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal15g0197 290 Pfam linker histone H1 and H5 family 120 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal15g0197 290 Gene3D - 2 59 - -
Lal15g0197 290 SMART sant 4 59 IPR001005 -
Lal15g0197 290 CDD SANT_TRF 6 57 - -
Lal15g0197 290 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lal15g0197 290 Gene3D - 111 193 IPR036388 -
Lal15g0197 290 PANTHER SINGLE MYB HISTONE 4 1 287 IPR044597 GO:0003691
Lal15g0197 290 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Lal15g0197 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lal15g0197 290 Coils Coil 238 272 - -
Lal15g0197 290 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 115 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal15g0197 290 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lal15g0197 290 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 287 - -
Lal15g0197 290 SUPERFAMILY "Winged helix" DNA-binding domain 114 192 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0197 Lal-Chr15 1354152 1359289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0197 1 289 Single Myb Histone (SMH) Gene Family AT5G67580 52.862 3.54e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal15g0197 Linker_histone 3.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0197 K09422 - gmx:778165 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0197 15 1354152 1359289 Lal23g1289 23 13922830 13928280 LSH
Lal15g0197 15 1354152 1359289 Lal16g1317 16 9341790 9357133 PCT
Lal16g1317 16 9341790 9357133 Lal15g0197 15 1354152 1359289 PCT