Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0178 ATGGAACCAGCATCCGCCGACAGTTCATCTCGACCTACTCCTATTCCTCCAGCTTCTAGTAACCAAAATCAATCAACTGAAGTCTCTGGACAAATTGGTAATGCAAATGGCTCACCATCCCTGTCACCTGTTTCTGGCATATCATTATGGGCAAGAAGTCTGAAATTCCCACAGTCCTTTGGGCTTGGAGCATCGCAACAGGACTCGCAGACTGAAAATAATGGGATATCAGCTTTGACTCGCCTGACTAGTGGGCTTGGATTAAGAATGCCCTCAAACGAGACTGCTCCGGTCAATTCAGAAGTGGAGCAACCTAATTTAATTGAATCATTCACCAAAGGTTTGGTTGACTCTTCCATGAGTGCAGTAAAGGCAGTGCAGGTCAAAGCACGCCATATTGTCTCTCAAAATAAACGTCGATACCAGGAAGATGGATTTGATTTGGATATGACATATATCACTGAAAACATAATTGCCATGGGATTTCCAGGTGGTGATTTTAGCTCTGGAGTTTTTGGATACATTGAGGGGTTCTATCGCAACCACATGGAAGAAGTGATCAGGTTTTTTGAAACCAATCATAAGGGAAAGTACAAAGTATACAATCTTTGTTCAGAGAGGTTGTATGATGGATCACTATTCCAGGGGAAGGTTGCAACTTTCCCATTTAGTGATCATAATTGCCCTCCTATTCAACTTATAGCATCATTTTGTCAAAGTACGTATTCATGGTTGAAGGGGGATATTCAAAATGTGGTGGTCGTTCATTGTAAAGCTGGCATGGGGAGAACAGGACTGATGATTTGTAGCCTCCTTTTATTTCTTAAGTTCTTCCCAACTGCAGAGGAAGCCATTGATTACTTTAACAAGAAAAGATGTATAGATGGAAAGGCTCTAGTTCTCCCTAGTCAGATTAGATATGTAAAATACTTCGAACAAACTTTATCACACTTCAATGGAGAAGTTCAGCCTGGGCGAAGGTGCATGCTAAGAGGGTTTAGGCTTCACAATTGCCCTTATTGGGTTAGGCCCTCCATTACAATATCCGATCACAGTGGAATTCTTTTCACCACGAGAAAGCATCCCAAGACAAAGGATCTAATGCCAGAAGATTTCTGGATCAGTGCACGGAAGAAAGGAATTGTGGTCTTTGCACTACCAGGAGAGCCTGGCCTGACAGAGTTAGTTGGAGACTTCAAAATTCATTTTCATGAACGACAGGGAGATTTCTACTGTTGGATGAATACAACAATGATAGAAAACCGAACATTTCTGAATGGCTTAGATCTGGATGGTTTTGACAAGAGAAAGATCCCTGCTCCAGGATTCCAGGTCGAAGTTGTGATGGTGGACTATAATAGCACCCTACCTACTAGGACAAAAGCCAATCCCGCCAGCAAAGGATCTGATTGCAGCACAAACAATGATCAAGTCAGTGCAGGGCTTGCATCTAATTCAAGTGAGAGCAAGGCCCCTAAAAATGGAGATGATGATGTATTCTCAGATAGTGATGAGGAGGAGACCCAGGATACACAAAGCAGGAAAGCTGCCAGTGAATACAGATTTGTGGCACCTCATCAAGTGTCTGAGGCAAGTAATGACCAGGCAGGGATGTTACATAAGACGGATCAGTTGTCACACCAGCATGAAGAGCGCACGCAAAATAATGCTTCTGTACAATCAACTACAGATAATAAAGTTCATACAGGGCCAAGCACCACCATGGAGTCGTTAAGGGCAAGTGAATTCAGGACAATTGCAGCAGATGCTTCAGTTTTTTCTTTTGCAGATGAAGATTTTGAAAGTGACTAA 1812 0.4266 MEPASADSSSRPTPIPPASSNQNQSTEVSGQIGNANGSPSLSPVSGISLWARSLKFPQSFGLGASQQDSQTENNGISALTRLTSGLGLRMPSNETAPVNSEVEQPNLIESFTKGLVDSSMSAVKAVQVKARHIVSQNKRRYQEDGFDLDMTYITENIIAMGFPGGDFSSGVFGYIEGFYRNHMEEVIRFFETNHKGKYKVYNLCSERLYDGSLFQGKVATFPFSDHNCPPIQLIASFCQSTYSWLKGDIQNVVVVHCKAGMGRTGLMICSLLLFLKFFPTAEEAIDYFNKKRCIDGKALVLPSQIRYVKYFEQTLSHFNGEVQPGRRCMLRGFRLHNCPYWVRPSITISDHSGILFTTRKHPKTKDLMPEDFWISARKKGIVVFALPGEPGLTELVGDFKIHFHERQGDFYCWMNTTMIENRTFLNGLDLDGFDKRKIPAPGFQVEVVMVDYNSTLPTRTKANPASKGSDCSTNNDQVSAGLASNSSESKAPKNGDDDVFSDSDEEETQDTQSRKAASEYRFVAPHQVSEASNDQAGMLHKTDQLSHQHEERTQNNASVQSTTDNKVHTGPSTTMESLRASEFRTIAADASVFSFADEDFESD 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0178 603 ProSiteProfiles Phosphatase tensin-type domain profile. 139 318 IPR029023 -
Lal15g0178 603 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 144 316 IPR029021 -
Lal15g0178 603 MobiDBLite consensus disorder prediction 541 576 - -
Lal15g0178 603 CDD PTP_PTEN 149 313 IPR045101 GO:0016791
Lal15g0178 603 Gene3D Protein tyrosine phosphatase superfamily 124 321 IPR029021 -
Lal15g0178 603 MobiDBLite consensus disorder prediction 551 576 - -
Lal15g0178 603 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 18 603 - -
Lal15g0178 603 ProSitePatterns Tyrosine specific protein phosphatases active site. 255 265 IPR016130 GO:0016311|GO:0016791
Lal15g0178 603 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 246 292 IPR000387 GO:0016311|GO:0016791
Lal15g0178 603 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 18 603 - -
Lal15g0178 603 ProSiteProfiles C2 tensin-type domain profile. 325 452 IPR014020 -
Lal15g0178 603 MobiDBLite consensus disorder prediction 458 490 - -
Lal15g0178 603 MobiDBLite consensus disorder prediction 458 520 - -
Lal15g0178 603 SMART PTEN_C2_2 323 451 IPR014020 -
Lal15g0178 603 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0178 Lal-Chr15 1241035 1247320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0178 29 603 Protein tyrosine phosphatase (PTP) family AT3G19420 61.017 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0178 K01110 - gmx:100801622 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0178 15 1241035 1247320 Lal15g0178 15 1241035 1247320 ECH
Lal15g0178 15 1241035 1247320 Lal12g0410 12 2909114 2914190 PCT
Lal15g0178 15 1241035 1247320 Lal24g0326 24 2312249 2317547 PCT