Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0164 ATGTCGCAGCGATCAGTGGCGGCACCGTTTTTGACAAAAACGTATGATATGGTGGATGATCCAGTGACAGATGATGTGATATCGTGGAGTGAGAGCGGGAACACGTTTGTGGTGTGGAAGAATGCAGAATTCGCAAAGGATTTGGTTCCTAAATATTTTAAGCACAACAATTTTTCAAGCTTTGTTCGTCAACTCAATACCTATGGATTCCGAAAGATCGTAGCAGACAAATGGGAATTCGCGAACGAACACTTCAAGCGTGGCCACAAGCATCTTCTCTCCCATATTAAACGTCGCAAGACGACTCTCCCTCAGCCGTCTGTGCAGCCACCGGAGGTCGTAAAATCCGGCGTCGACGACAACTCTCCGTCAAACTCCGAGGCCGACGACATGAGGTCCACGTTTACCTCCACCCCCGATTCTAAGAAATCAATATCAGCAGATGTGACAAATTTATCAAGTGAGAATCATAAACTGAAAAAAGAGAATGAAACTCTAATCTCAGAACTGGCACATGTGAAGAATAAGTGCGATGAGTTGGTAGTTTTTCTAAGGGATTATTTAAAAGTGGATCCTGATAAAATAAATCGCATATTGGGACAAGGAAGTTGTGGGTCCAAAAATGAAACAGTGTGTTATAATAATGACCAAAATGTAGTAGGTGAAGGTGTAGTAGGTGAAAGTGGGAATAGTTTGAAATTGTTTGGTGTTTGGTTGAAAGAAGAGAAAAATAACAACCACAAGAAGAGAGAGTGCCAAGACCAAATGGGCCTTAGTGGGCCTCGCATGAAGGAGTTGAAAACTGTTGTTGACTTTAGTAGTGCCATGCCTGTGATGAAGAGCAACGAGGTTTGTAATTGA 861 0.4274 MSQRSVAAPFLTKTYDMVDDPVTDDVISWSESGNTFVVWKNAEFAKDLVPKYFKHNNFSSFVRQLNTYGFRKIVADKWEFANEHFKRGHKHLLSHIKRRKTTLPQPSVQPPEVVKSGVDDNSPSNSEADDMRSTFTSTPDSKKSISADVTNLSSENHKLKKENETLISELAHVKNKCDELVVFLRDYLKVDPDKINRILGQGSCGSKNETVCYNNDQNVVGEGVVGESGNSLKLFGVWLKEEKNNNHKKRECQDQMGLSGPRMKELKTVVDFSSAMPVMKSNEVCN 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0164 286 Coils Coil 142 176 - -
Lal15g0164 286 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal15g0164 286 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal15g0164 286 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal15g0164 286 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal15g0164 286 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal15g0164 286 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 286 IPR027725 -
Lal15g0164 286 SUPERFAMILY "Winged helix" DNA-binding domain 8 99 IPR036390 -
Lal15g0164 286 MobiDBLite consensus disorder prediction 99 149 - -
Lal15g0164 286 MobiDBLite consensus disorder prediction 118 149 - -
Lal15g0164 286 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 286 - -
Lal15g0164 286 Gene3D - 2 101 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0164 Lal-Chr15 1143915 1149378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0164 2 286 HSF AT4G36990 47.902 8.37e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal15g0164 HSF_DNA-bind 2e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0164 K09419 - gmx:100791543 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0164 15 1143915 1149378 Lal15g0164 15 1143915 1149378 ECH
Lal16g0219 16 1313620 1316343 Lal15g0164 15 1143915 1149378 LSH
Lal15g0164 15 1143915 1149378 Lal16g1393 16 10545154 10550380 PCT
Lal16g1393 16 10545154 10550380 Lal15g0164 15 1143915 1149378 PCT