Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0134 ATGAATCATCAAAATATTGAAGACCAAATCATGCTCATGTCTCAGTTATACTCTACCGCTACTCCATACACTCAAATAGGATCTCAACAAGGGGATAATAAGAAGCCAAGACGAAGGCGTAATAAGAAGTGCAAAGGAGGAGAAAACGGAGGTTTGGGATCACGGAAGAAGAGAAAACTGAGCGATGAGCAAATTAATATGCTGGAGCAAAGTTTTGGTAATGAACATAAACTTGAATCTGAAAGGAAGGAGAAGCTGGCAATGGAGCTTGGTCTAGATCCTCGTCAAGTGGCTGTGTGGTTCCAAAACAGAAGAGCCCGTTGGAAGAACAAGAAATTGGAGGAAGGCTACTCTAACCTCAAAAAAGCACATGAAGCCACCACTCTCCAGAAATGCCTTCTTGAAACTGAGGTGTTGAAGCTCAAAGAACAATTATCGGAGGCTGAGAAAGAAATTCAGGTTCTAAAGCATAGTGATAGAGTCTCAAGCAACAGCCCCAGTTCATCACAGCACTCTCAGTCAATGGAAGTGGTAGTGGACCCACCATTTCTTGGAGAGTTTCATGTTGATGGATATGATGATGTGTTTTACGTGCCCGAGACCCATTACATCAATGGCATGGAATGGGTTAATTTGTATATTTGA 645 0.4217 MNHQNIEDQIMLMSQLYSTATPYTQIGSQQGDNKKPRRRRNKKCKGGENGGLGSRKKRKLSDEQINMLEQSFGNEHKLESERKEKLAMELGLDPRQVAVWFQNRRARWKNKKLEEGYSNLKKAHEATTLQKCLLETEVLKLKEQLSEAEKEIQVLKHSDRVSSNSPSSSQHSQSMEVVVDPPFLGEFHVDGYDDVFYVPETHYINGMEWVNLYI 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0134 214 MobiDBLite consensus disorder prediction 158 175 - -
Lal15g0134 214 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Lal15g0134 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 7 213 - -
Lal15g0134 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 213 IPR045224 GO:0003700
Lal15g0134 214 Coils Coil 138 158 - -
Lal15g0134 214 MobiDBLite consensus disorder prediction 156 175 - -
Lal15g0134 214 MobiDBLite consensus disorder prediction 23 61 - -
Lal15g0134 214 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Lal15g0134 214 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Lal15g0134 214 SUPERFAMILY Homeodomain-like 53 119 IPR009057 -
Lal15g0134 214 CDD homeodomain 55 112 IPR001356 GO:0003677
Lal15g0134 214 Gene3D - 47 119 - -
Lal15g0134 214 SMART HOX_1 54 115 IPR001356 GO:0003677
Lal15g0134 214 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Lal15g0134 214 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Lal15g0134 214 MobiDBLite consensus disorder prediction 45 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0134 Lal-Chr15 937842 940377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0134 1 214 Homeobox Transcription Factor Family AT4G36740 54.709 8.36e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lal15g0134 Homeodomain 1.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0134 K09338 - gmx:100809616 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0184 16 1101153 1102774 Lal15g0134 15 937842 940377 LSH
Lal15g0134 15 937842 940377 Lal23g1388 23 14522057 14524053 LSH