Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0126 ATGATGCATCGTTCTTGCAGTGACGCTCATCAGGGGCACGTGATGGGACCGTGCTCTTGTGGGATGTTTCATAGCCAAACCAGTTCATTCTCTATGCTATTCTCCATGCCAAACCACAAACCCTATGAATATGATCATCACGAACTACATAACATGTATTCATTTACTGGTACTCCTTCTTCATCTAATGTGGACTGCACCCTCTCACTTGGAACCCCTTCAACCCGTTTGACCGAAGATGAAGAGAAGCGAAACCGCCATGAACGTCGTTCCGGTTCGAACTTTTGCTGGGATTTACTACAAACCAAACATAGCCCTCAATCGCAAACTAAGTCAAACAGAGGCAGCAATAGTAACAACACAAATGACTCTCTCCTCCCTCGACGCTGCGCCAACTGCGACACCACTTCAACTCCTCTTTGGCGGAATGGACCTCAAGGCCCAAAGTCACTCTGCAATGCCTGTGGGATCAGATTCAAGAAAGAAGAGAGAAGAGCTAGTGCTGCCGCTACCACGCCATCAGTAGCCTCTGGCGGCGTAATAGATTCGGCGCAGATGTATAGCCAGCATAACAACTCATGGTTTGCACACTCGCAGAGCCAGAAGATGCAATGTCTCTCGCCTTCAATGGGGAATGAGCCAAGGTACATGGACCATGACGCCGATCGTGATTCCGAGAATGGCATTCCCTTCCTCTCTTGGAGACTCAACGTTACTGACAGAACAAACTTCGTTCACGACTTTACAAGATGA 753 0.4834 MMHRSCSDAHQGHVMGPCSCGMFHSQTSSFSMLFSMPNHKPYEYDHHELHNMYSFTGTPSSSNVDCTLSLGTPSTRLTEDEEKRNRHERRSGSNFCWDLLQTKHSPQSQTKSNRGSNSNNTNDSLLPRRCANCDTTSTPLWRNGPQGPKSLCNACGIRFKKEERRASAAATTPSVASGGVIDSAQMYSQHNNSWFAHSQSQKMQCLSPSMGNEPRYMDHDADRDSENGIPFLSWRLNVTDRTNFVHDFTR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0126 250 CDD ZnF_GATA 129 161 IPR000679 GO:0006355|GO:0043565
Lal15g0126 250 ProSitePatterns GATA-type zinc finger domain. 130 155 IPR000679 GO:0006355|GO:0043565
Lal15g0126 250 MobiDBLite consensus disorder prediction 59 75 - -
Lal15g0126 250 MobiDBLite consensus disorder prediction 59 90 - -
Lal15g0126 250 Pfam GATA zinc finger 130 164 IPR000679 GO:0006355|GO:0043565
Lal15g0126 250 PANTHER GATA TRANSCRIPTION FACTOR 18 2 249 - -
Lal15g0126 250 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 126 168 - -
Lal15g0126 250 MobiDBLite consensus disorder prediction 76 90 - -
Lal15g0126 250 Gene3D - 126 193 IPR013088 GO:0006355|GO:0008270
Lal15g0126 250 PANTHER GATA TRANSCRIPTION FACTOR 18 2 249 IPR044272 GO:0003700|GO:0009908
Lal15g0126 250 ProSiteProfiles GATA-type zinc finger domain profile. 128 160 IPR000679 GO:0006355|GO:0043565
Lal15g0126 250 MobiDBLite consensus disorder prediction 104 129 - -
Lal15g0126 250 SMART GATA_3 124 176 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0126 Lal-Chr15 880071 882252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0126 19 250 C2C2-Gata Transcription Factor Family AT3G50870 43.493 1.12e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal15g0126 GATA 4.5e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0126 - - gmx:100790571 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0169 16 1023101 1025180 Lal15g0126 15 880071 882252 LSH
Lal15g0126 15 880071 882252 Lal23g1414 23 14682246 14683505 LSH