Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0124 ATGAGAGACCAAGATAAGGAAATAGAGATGCCAACCACTTTAGGTTACAGTACAGATATTTCTTCTTCAAAGCTGTCTTCTCCAACTGTAGGTGAAACAAGTGATCATCAACCTTCTCCTGCTACTCAAACTCACACATTAATCTTCAATGATCCACCTCAAACTTCCCAATGTCATAGCAATCTTTATCCTCTTATTGCAATCACTCAATCTGAGAAACCAAGCACAGATCCATATCTAAGTCAATCTCCTATTGTCATAACAAGCATAACAACTACCCCAGTTGACAGCATACCAATAAACCCCTCAAGAACAGCACCTCCACATATAACCGCAGCCACGACCACAACCGCGGCAATAAGATACCGAGAATGTCTGAGGAACCACGCAGCCAGCATGGGGAGCCATGGGGTAGATGGATGTGGAGAGTTCATGCCGAGTGGAGTAGAAGGCACCGCAGAATCACTTCAGTGTGCTGCATGTGATTGCCACCGCAATTTCCACAGAAAAGAAGTTGAAGGGGAACCTCAACAACATGCTTCTAATTATCAAACTTATCATCCCACTAAGCACAATAACACTCACAATGTAATACCTTTTCCTCCTCCTCCTCCTCCTCATCATCATCAACAACATTATCATCATAATCATACTCACCTTCAGTTCCACACACCACCTTCTTCTATGCATCAACACCATAGATTTTCTAACGGGGTTAGCACCCCTACAAGCCTGATTACCCCGGTGATGATGGCCTTCCGAAGCGGTGGCGTCCCTACCGAGTCCTCCAGTGAAGATCTCAACATGTTTCAGTATAATAGTGGACAGATATTAGTGCAACCACCAACAGTGTCAAAGAAGAGGTTCAGGACAAAGTTCACACAACAACAAAAGGATATGATGATGGAGTTTGCTGAGAAGCTGGGATGGAAGATTCAGAAACAAGATGAGGAGGAAGTGCAGCAATTTTCATCTCAAGTTGGTGTCAGAAGACAAGTGTTCCAGGTTTGGATGCACAATAACAAGCAAGCAATGAAGAAGCAGCAAATGTAA 1053 0.4368 MRDQDKEIEMPTTLGYSTDISSSKLSSPTVGETSDHQPSPATQTHTLIFNDPPQTSQCHSNLYPLIAITQSEKPSTDPYLSQSPIVITSITTTPVDSIPINPSRTAPPHITAATTTTAAIRYRECLRNHAASMGSHGVDGCGEFMPSGVEGTAESLQCAACDCHRNFHRKEVEGEPQQHASNYQTYHPTKHNNTHNVIPFPPPPPPHHHQQHYHHNHTHLQFHTPPSSMHQHHRFSNGVSTPTSLITPVMMAFRSGGVPTESSSEDLNMFQYNSGQILVQPPTVSKKRFRTKFTQQQKDMMMEFAEKLGWKIQKQDEEEVQQFSSQVGVRRQVFQVWMHNNKQAMKKQQM 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0124 350 SUPERFAMILY Homeodomain-like 280 347 IPR009057 -
Lal15g0124 350 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 121 172 IPR006456 -
Lal15g0124 350 ProSiteProfiles 'Homeobox' domain profile. 284 348 IPR001356 GO:0003677
Lal15g0124 350 Pfam ZF-HD protein dimerisation region 120 172 IPR006456 -
Lal15g0124 350 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 69 348 - -
Lal15g0124 350 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 122 171 IPR006456 -
Lal15g0124 350 CDD homeodomain 287 349 IPR001356 GO:0003677
Lal15g0124 350 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 69 348 - -
Lal15g0124 350 MobiDBLite consensus disorder prediction 1 53 - -
Lal15g0124 350 MobiDBLite consensus disorder prediction 14 53 - -
Lal15g0124 350 Gene3D - 280 347 - -
Lal15g0124 350 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 286 343 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0124 Lal-Chr15 871265 872317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0124 120 347 ZF-HD Transcription Factor Family AT1G75240 45.957 1.28e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal15g0124 ZF-HD_dimer 2.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0124 - - lang:109332583 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0124 15 871265 872317 Lal23g1417 23 14699958 14701007 LSH