Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0122 ATGTCATTGAAAAGCATACTACGAGAATTCAAGGAGATGAGGGGTGGTATTGGTAGCATATCAAGGCGAGGTGCACAAAGCAAGCATTGGCACAGTCGTACGAAGTCATACATAGTTCCTGATGTCACAGTAACTCCACTTGAACCTATTCCACAAGGACCATGGGCAAACCTACCTCCTGAATTGCTTCTGGACATAATCCGGAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCACGCGCTGTCATTGTTTCTTGTGCTTCAGTGTGTAAATCATGGAGGGTTGTTACTAAAGAGACTGTCAAGACTCCTGAGCAATGTGGAAGGCTCACATTTCCCATTTCATTGAAGCAGCCGGGTCCTCGTGATTCTCCAATCCAGTGCTTTATCAGAAGGAACAGAGAAACTTCTACGTTTCTATTGTACTTCGGTCTGGTGCCATCGGAGAATGAAACTGATAAATTGTTATTAGCTGCGAAAAAGATAAGAAGGGCAACAGGCACAGACTTTATCATATCTTTGGTTTCAGATGAGTTTTCTCGGTCTAATTTTTTGGGGACCAAGTTCACTATATATGACAGCCAACCTCCATGTGAAGCTGGAATTCAATCAAATAGCCGTTCAAATACACGATTTCACTCTAAGCAGGTGTCTCCAAGAGTTCCAGCATGTAACCAAGTTGTTAGCACCATAGCTTATGAACTCAATGTTCTCCGTACAAGAGGGCCAAGAAGAATGCACTGCACCATGAACTCCATATCTGTCTCAGCGATTCAGGAAGGGGGCAGCGTTCCAACTCCCACCTCTTTTCCACACAGTATTGATGAACATTTTTCTCCCTCGCCAGAATTGAAAGGAAAAGGTCTGGTTACAGATTTAAACTCTGCAAGCCTCTCAGAGCTACAGATGCAAAACCAAGGCTCGGTTGAGCCTCTTGTACTTAAAAACAAGGTTCCCAGATGGCATGAGCAGCTGCAATGCTGGTGCCTAAACTTCAAGGGTCGCGTTACAGTGGCTTCTGTTAAAAACTTTCAACTCGTGGCTGCTGTAGATCCATCGCATAACTTTTCTGCTTCAGAACAAGAAAAGGTGATCTTGCAGTTTGGAAAGATAGGAAAAGACATATTTACCATGGATTACCTTTATCCACTCTCTGCCTTCCAAGCCTTTGCAATATGCTTAAGCAGCTTCGATACAAAACCTGCATGTGAATGA 1215 0.4395 MSLKSILREFKEMRGGIGSISRRGAQSKHWHSRTKSYIVPDVTVTPLEPIPQGPWANLPPELLLDIIRRVEESETSWPARAVIVSCASVCKSWRVVTKETVKTPEQCGRLTFPISLKQPGPRDSPIQCFIRRNRETSTFLLYFGLVPSENETDKLLLAAKKIRRATGTDFIISLVSDEFSRSNFLGTKFTIYDSQPPCEAGIQSNSRSNTRFHSKQVSPRVPACNQVVSTIAYELNVLRTRGPRRMHCTMNSISVSAIQEGGSVPTPTSFPHSIDEHFSPSPELKGKGLVTDLNSASLSELQMQNQGSVEPLVLKNKVPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNFSASEQEKVILQFGKIGKDIFTMDYLYPLSAFQAFAICLSSFDTKPACE 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0122 404 Pfam Tub family 116 399 IPR000007 -
Lal15g0122 404 ProSitePatterns Tub family signature 1. 332 345 IPR018066 -
Lal15g0122 404 SUPERFAMILY F-box domain 49 117 IPR036047 GO:0005515
Lal15g0122 404 PANTHER TUBBY-RELATED 1 404 - -
Lal15g0122 404 Gene3D Tubby Protein; Chain A 113 404 IPR025659 -
Lal15g0122 404 PRINTS Tubby superfamily signature 176 200 IPR000007 -
Lal15g0122 404 PRINTS Tubby superfamily signature 225 252 IPR000007 -
Lal15g0122 404 PRINTS Tubby superfamily signature 314 331 IPR000007 -
Lal15g0122 404 PRINTS Tubby superfamily signature 332 348 IPR000007 -
Lal15g0122 404 PRINTS Tubby superfamily signature 361 380 IPR000007 -
Lal15g0122 404 PRINTS Tubby superfamily signature 382 404 IPR000007 -
Lal15g0122 404 Gene3D - 49 102 - -
Lal15g0122 404 Pfam F-box domain 55 98 IPR001810 GO:0005515
Lal15g0122 404 SUPERFAMILY Tubby C-terminal domain-like 104 404 IPR025659 -
Lal15g0122 404 ProSitePatterns Tub family signature 2. 389 404 IPR018066 -
Lal15g0122 404 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0122 Lal-Chr15 860230 863306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0122 1 404 TUB Transcription Factor Family AT2G18280 62.919 0.0 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lal15g0122 Tub 6e-95 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0122 K19600 - gmx:100798958 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0166 16 1011972 1015317 Lal15g0122 15 860230 863306 LSH
Lal15g0122 15 860230 863306 Lal23g1422 23 14724574 14728035 LSH