Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0116 ATGGCGGGTATATTTTCATTAGGTGGTGGTGGTGGTGGTAGTGGTGGTGGAGGGGGAGGAAACAACAACAACAACAACCAAGACAGCCGGCAACAACAGCAACCCACAGATTTTCTTCCTCCTCCTCCAGAAGCCTTATTTTGGTATAATAATAACAAGAATGTGGAAGATGTACGAGGTTTTGAGTTATGGCACCACCAACAACAGCAACAAATCCCTCAAGGAAGACCTATTATCCACCAAGATCTTTATTCCTTAGGGGTGGGCCCCAGCAGGTCCTCCGATGCGGTGGCGAGCTCAGGCAGCGGTGGCGGCGGAGGGATTAGTTGTCAGGATTGTGGAAACCAAGCTAAGAAAGATTGCCCTCATATGAGGTGCAGGACTTGCTGCAAAAGTCGTGGCTATCATTGCCAAACCCATGTTAGGAGCACATGGGTTCCTGCTTCAAAGCGTCGCCAAAGACTTCAACAACAACAACAACTAAACACTGAGAGAGATCATAACCCCACCTCTTCCATTCCTTTGCGTTCTAACCCTTCAATTTCTCCAGCAGGGTTAGAGCATACAAATTTTCCTGCTATGGTGAGTTCTTCTGCTGAGTTCAGATGTGTACGAGTTAGTTCCATGGAGGTCACGGAGGGGCAATACGCTTATCAAACAGCCGTGAACATTGGAGGGCATGTTTTCAAAGGAATTCTCTATGACCAAGGTCCTGATCATAGTACTAGTAGTCACACCGGTGGAGGGGAAAGCTCCTCCGCCGGTGTAATTGGTGATGGAGGAGTCCAGTTCTCGAACCTCATTGCCACTACCACCACCGCCACCATCACCGCAGGAGCATTTATGGATCCTTCTTTTTTGTATCCAACTCAGCTTAACACATTCATGCCTCCTAGTGGTAGACAATTCTTCCCTCACCCTAGATCTTGA 930 0.4817 MAGIFSLGGGGGGSGGGGGGNNNNNNQDSRQQQQPTDFLPPPPEALFWYNNNKNVEDVRGFELWHHQQQQQIPQGRPIIHQDLYSLGVGPSRSSDAVASSGSGGGGGISCQDCGNQAKKDCPHMRCRTCCKSRGYHCQTHVRSTWVPASKRRQRLQQQQQLNTERDHNPTSSIPLRSNPSISPAGLEHTNFPAMVSSSAEFRCVRVSSMEVTEGQYAYQTAVNIGGHVFKGILYDQGPDHSTSSHTGGGESSSAGVIGDGGVQFSNLIATTTTATITAGAFMDPSFLYPTQLNTFMPPSGRQFFPHPRS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0116 309 MobiDBLite consensus disorder prediction 17 35 - -
Lal15g0116 309 MobiDBLite consensus disorder prediction 148 186 - -
Lal15g0116 309 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 307 IPR007818 GO:0003700|GO:0006355
Lal15g0116 309 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 191 238 IPR006511 -
Lal15g0116 309 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 109 151 IPR006510 -
Lal15g0116 309 Pfam Domain of unknown function (DUF702) 107 239 - -
Lal15g0116 309 PANTHER PROTEIN SHORT INTERNODES 1 307 - -
Lal15g0116 309 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0116 Lal-Chr15 823544 826119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0116 1 309 C2H2 Transcription Factor Family AT1G75520 41.711 1.03e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lal15g0116 DUF702 2.8e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0116 - - lang:109331278 392.504