Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0110 ATGGAACATCAACCACTCATTGCTCATGGTGCTACGGATTTGAAGGAGGTTGTCATGAACGACGCCGTTTTGAAAAATAAACGGGGTCGTCCAGTTAAAGGTAATCAGAAAACGACACCGTCTTTGTCAAGGCCTAAGAAGGAAGAAGATGTTTGCTTTATTTGCTTTGACGGTGGAAGCCTCGTTCTCTGTGATCGCCGGGGTTGCCCTAAAGCATATCATCCTGCGTGTATTAAGCGAGATGAAGCCTTTTTCCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGCAGTGTTTGTGAGAAGGCATCCCATTATATGTGCTATACATGTACATATTCTTTGTGCAAGGGATGTTCAAAAACTGCTGATTTTGTCAGTATCAGAGGAAATAAAGGCCTTTGTGCAATATGCATGAAAACTATAATGCTGATTGAGAATAATGCCCAGGAAAACAATGCAGTGTGTGAAGTGGATTTCAATGACACAAGCAGCTGGGAGTATCTTTGCAAGGTGTATTGGACATCTTTGAAAGCGGACCTGTCTTTAACAATGGATGAGATCCTTCAAGCTAAAAACCCATGGAAAGGTGCTGCTCTGAGTCGTAAGGTTGGAACTTCACATGAACTTTATCATCTTAAAGATGAAAAAGGTTCTGGATCTGAGAACTCCTGTATAGACACTGAATCTGATAATTCAAATAACAAGAAGCCTAAGAGAAGTGATGAGCAGATACATATTGTGGATGGTGTCTTGAATGATGTTGGGTGCTGTGCACAACACTTGCCCATTACCCGTGAGCTGATTGGTGGTATATGTATACACAATAATCAGATCAACCCTAATGATGCATCACCTGGTGATAGCACTAATATAGGAGATGTGAGATCAGAAGTGTCTGGTATTGCATTGGACATGTCGTCATTGCTTCTCTCTACAGGGATTGAGCAACCACGTGGTGATTCTGTGAATGATAAATTGTGGCATTACATGGATCCAACTGGGAAGGTTCAAGGACCTTTTTCTATGTTGCAGCTGTACAAGTGGAAAGAAAGTGGACATTTCCCTTCAGATATCAGAATATGGAGGATAGATGAGAAACAAGATTTCTCTGTATTGTTAACGGATGCCCTAGATGGAAAGTGTTCCAGAAATGTGTCATTACCATACAACGGCCAACTGCTGTCCTTATGGCCGAGTGTTACTTTGGATAATAAAGATGATAGTCAGGATATTGGGAGAATTGCATCAAGGAATGAAATTCACACAGACAGTCTAGTTATCGAAAAGAGTGGGGAGCAAAAGGTGGATGGTACTTGTACACAGTCCAATGGTAAATATGAATCTATTAGGAGCAATGGGATTAGCAATGGGGGGCAAAGTGGAAACTTTCTAAGGAGAGAGGAGTCATCGAAATACGATTTTTTTAGTCACAACCATCCCGATGTATATCCTTCACTGCCTTCAACTGCCTTTTCGGATAAATTACTGGAAGGTCTTGGGATTGAGGCAAACCCGGAAGATAATGAAAACCATGGCTTGAATAGGACTTCTGAAGGACAGAGTAATAGTGGGCAGAGTTATCAGAAACAATCAGAGAGTGAAGAGAATTCGGGGCAATCTTCTGGACAGAACTGGGAATGCCCTCAAGTAATTAATCCAGTGTGTAATGCATCGACATGGCTGGCAATCTTTGGTGAGCCTACTGATTGTGATGAATCAGTTTCAGATCTGTTGGCGGAAGTGGAGGCAATGGAGTCACGTGGTGCTGGCATGGAATCTCCCACTTCAATCATGAAAAGTGGTGAGGAATTGACTGACAGTTCTAAAACAGATTTTCTCAGTTTTGTAGGTGGGTTTAGCACAATGCTTGATGTAGGTAAAGGTGATGCACTTAGCTCCACTGGTGATTTAAACTTTCCATCTCAATCAGCAGCAGCAGCGGAACCTTTTCGTCAAACTGATGCATATCATAATCCTCAAAGAATATCTGGGATGAATTCCTCAAAAAGTTCTGAAGATGATGAGGTTAATGTGATACATCACATTGGAGGCCATTCTTCTCATATCCGGTCTGGTCTACAAAAGAGGCCTTGTGCCAGCTTTTGGTGGATGATACTGTCCTGTTGCATCACAAACACACTCACTTCAAATGCTAAGGATTACAACTTCAAAACTAATTCCTCTTACGCTGTACATTTAACACCTCCACTTAGATTAGCTGCTCCAGCAATTGCTGCTGGACTTGGTGCTTTGGGTACTCTGATTCCTGTTGACGTCATAGATCACATTGAAGGCCATTCATATTATTTATGGGCTACACAACAGATCTTAGATCAATTTGAATTGGATAATTATTATCCTTTTTATAACATCATTCTTCATTGCTTCATTGTGAAGAACTTCTAG 2412 0.4138 MEHQPLIAHGATDLKEVVMNDAVLKNKRGRPVKGNQKTTPSLSRPKKEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSVCEKASHYMCYTCTYSLCKGCSKTADFVSIRGNKGLCAICMKTIMLIENNAQENNAVCEVDFNDTSSWEYLCKVYWTSLKADLSLTMDEILQAKNPWKGAALSRKVGTSHELYHLKDEKGSGSENSCIDTESDNSNNKKPKRSDEQIHIVDGVLNDVGCCAQHLPITRELIGGICIHNNQINPNDASPGDSTNIGDVRSEVSGIALDMSSLLLSTGIEQPRGDSVNDKLWHYMDPTGKVQGPFSMLQLYKWKESGHFPSDIRIWRIDEKQDFSVLLTDALDGKCSRNVSLPYNGQLLSLWPSVTLDNKDDSQDIGRIASRNEIHTDSLVIEKSGEQKVDGTCTQSNGKYESIRSNGISNGGQSGNFLRREESSKYDFFSHNHPDVYPSLPSTAFSDKLLEGLGIEANPEDNENHGLNRTSEGQSNSGQSYQKQSESEENSGQSSGQNWECPQVINPVCNASTWLAIFGEPTDCDESVSDLLAEVEAMESRGAGMESPTSIMKSGEELTDSSKTDFLSFVGGFSTMLDVGKGDALSSTGDLNFPSQSAAAAEPFRQTDAYHNPQRISGMNSSKSSEDDEVNVIHHIGGHSSHIRSGLQKRPCASFWWMILSCCITNTLTSNAKDYNFKTNSSYAVHLTPPLRLAAPAIAAGLGALGTLIPVDVIDHIEGHSYYLWATQQILDQFELDNYYPFYNIILHCFIVKNF 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0110 803 CDD GYF 326 379 IPR003169 GO:0005515
Lal15g0110 803 MobiDBLite consensus disorder prediction 434 465 - -
Lal15g0110 803 MobiDBLite consensus disorder prediction 212 242 - -
Lal15g0110 803 CDD PHD5_NSD 51 96 - -
Lal15g0110 803 Pfam GYF domain 329 371 IPR003169 GO:0005515
Lal15g0110 803 PANTHER BNAC08G48800D PROTEIN 16 244 - -
Lal15g0110 803 PANTHER BNAC08G48800D PROTEIN 289 554 - -
Lal15g0110 803 PANTHER BNAC08G48800D PROTEIN 557 675 - -
Lal15g0110 803 ProSitePatterns Zinc finger PHD-type signature. 52 112 IPR019786 -
Lal15g0110 803 ProSiteProfiles Zinc finger PHD-type profile. 49 115 IPR019787 -
Lal15g0110 803 PANTHER UNCHARACTERIZED 16 244 - -
Lal15g0110 803 PANTHER UNCHARACTERIZED 557 675 - -
Lal15g0110 803 PANTHER UNCHARACTERIZED 289 554 - -
Lal15g0110 803 ProSiteProfiles GYF domain profile. 326 380 IPR003169 GO:0005515
Lal15g0110 803 MobiDBLite consensus disorder prediction 504 547 - -
Lal15g0110 803 Gene3D - 328 384 IPR035445 -
Lal15g0110 803 SMART gyf_5 327 382 IPR003169 GO:0005515
Lal15g0110 803 MobiDBLite consensus disorder prediction 516 547 - -
Lal15g0110 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 159 IPR013083 -
Lal15g0110 803 MobiDBLite consensus disorder prediction 436 465 - -
Lal15g0110 803 SUPERFAMILY FYVE/PHD zinc finger 46 103 IPR011011 -
Lal15g0110 803 SMART PHD_3 51 97 IPR001965 -
Lal15g0110 803 SUPERFAMILY GYF domain 324 379 IPR035445 -
Lal15g0110 803 MobiDBLite consensus disorder prediction 654 675 - -
Lal15g0110 803 MobiDBLite consensus disorder prediction 658 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0110 Lal-Chr15 776809 783039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0110 49 122 PHD Transcription Factor Family AT4G14920 36.486 3.96e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0110 - - aip:107642933 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0148 16 901885 905552 Lal15g0110 15 776809 783039 LSH