Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0101 ATGGAAACTCAACAACCAAATGAGGATGGGGGCAGTGGAAAAGGTGGATTTATGAGCAGGCAAAGTAGTACAAGGTGGACTCCCACAACAGACCAAATAAGAATATTGAAGGATCTTTACTACAACAATGGAATAAGATCCCCAAGTGCTGAACAGATTCAGAGGATCTCTTCTAGGCTGAGACAGTACGGTAAGATTGAAGGCAAGAATGTCTTTTATTGGTTCCAAAACCACAAAGCTCGAGAAAGACAGAAGAAAAGGTTCACTTCTGATGTTCCCATGCAAACAGCTGCGACTCCTATTGCTCCTGCTTCTGCATGGAAACATGATGAGCCACCCATCCATGCCAAGTATTCTAACATATCCACCGGTATAGGGGTTTCTTCCACAGCATCTTCTTCTGCTGGAATTGTTACTATGGGACACATGGGAAATTATGGCCATGGGTCTGTGCCCATGGAGAAGAGTTTTAGGGACTGCTCAATATCAGCAGGAGGTAGCAGTGGCCATGTTGGTGGTGCCATAAACAACAATTTGGGGTATTTTGGTAAGGACCAATATTCTTCAGCCTACAGTTTGTTTGAAAAAACAAGGGCAAGTGGAGAAACCATGGAGGAAGAAGAAGAAGAAGAGCAAGTAGAGGATGGTTCCCCTGAGATTCAAACACTCCCCTTATTCCCTGTGCACTGTGAAGACATTCATGGCTATTGCAACCTCAGGTCTAACTCTTCTAACCATGTTAGTAGCTGGTATCAGACAGAAGATGGATTCATGAACGGTTCTCGTGCTTCCATGGAACTCACTCTCAACTCCTACACCCGCAAATCTCCAGATTACTCTTGA 843 0.4437 METQQPNEDGGSGKGGFMSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISSRLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDVPMQTAATPIAPASAWKHDEPPIHAKYSNISTGIGVSSTASSSAGIVTMGHMGNYGHGSVPMEKSFRDCSISAGGSSGHVGGAINNNLGYFGKDQYSSAYSLFEKTRASGETMEEEEEEEQVEDGSPEIQTLPLFPVHCEDIHGYCNLRSNSSNHVSSWYQTEDGFMNGSRASMELTLNSYTRKSPDYS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0101 280 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 274 IPR044555 GO:0003700|GO:0099402
Lal15g0101 280 SMART HOX_1 21 89 IPR001356 GO:0003677
Lal15g0101 280 Gene3D - 18 84 - -
Lal15g0101 280 ProSiteProfiles 'Homeobox' domain profile. 19 85 IPR001356 GO:0003677
Lal15g0101 280 Pfam Homeodomain 23 84 IPR001356 GO:0003677
Lal15g0101 280 MobiDBLite consensus disorder prediction 198 218 - -
Lal15g0101 280 CDD homeodomain 24 86 IPR001356 GO:0003677
Lal15g0101 280 SUPERFAMILY Homeodomain-like 16 90 IPR009057 -
Lal15g0101 280 MobiDBLite consensus disorder prediction 1 28 - -
Lal15g0101 280 PANTHER PROTEIN WUSCHEL 1 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0101 Lal-Chr15 707484 708935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0101 17 232 Wox Gene Family AT2G17950 41.200 2.74e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lal15g0101 Homeodomain 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0101 - - vra:106776674 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0142 16 851954 853407 Lal15g0101 15 707484 708935 LSH
Lal15g0101 15 707484 708935 Lal23g1463 23 14984720 14986140 LSH