Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0096 ATGTCGAAGGGTAGAATCACCGGCATTGTCCAAAGGTTCAACAATTCCAAAGGCTTCGGCTTCATCAAACCCGATGACGGCGCTGACGATCTCTTCATTCACTACTCTTCCATCCGATCCGACGGTTTCCGAACCCTCGTTGAAGGTGATCACGTCGAGTTCACCGTCGGAACTGCTGACGACGGCAAACTCAAGGCTCTCGATGTTACCGGCCTCAACGGTGCCCCGCTCCGTTCCGCTCTAGACAATAACGCCGGTCGTGGCGCCGGTGGTGATGGATGTTATCACTGTGGCGAATTTGGCCACATGGCTAGGGATTGCAACCGTGGCTCCAACGTCGGTGGTGGTGGTCGTGGCGCCGGTGGAGCTGGATGCTATCAGTGCGGTGAATTTGGTCACCTCGCTAGGGATTGCAACCGTGGTTCCAATGCTGGTGCTTGTTATAATTGTGGCGGAATTGGTCACATGGCTAGGGATTGCACAAGTGGAAGAAACAGTGGCGGTGGCGGTGGTTGTTACAACTGTGGTGGATTTGGACACATGGCTAGGGATTGCTTGAAGGGGGGCAGTGGTGGCGGTGGCGGTGGGGGATCGTGCTACAAGTGTGGCGAGTTCGGGCACATATCGAGGGACTGCAACGTTGGAATTGGCGATCGTGGTCGTGTTGGTGGTAATGGTGGAGGTTGCTATAGATGCGGTGAAGTTGGTCACTTGGCTAGGGATTGCAGCAAAGAAGGTGGAAACTATGGTGGTGGCAACGGTGAAAACCGCACTTGCTTTAATTGTGGTAAGCCTGGCCACTTTGCTAGGGAATGTGTTGAAGCTTCTGAATAG 834 0.542 MSKGRITGIVQRFNNSKGFGFIKPDDGADDLFIHYSSIRSDGFRTLVEGDHVEFTVGTADDGKLKALDVTGLNGAPLRSALDNNAGRGAGGDGCYHCGEFGHMARDCNRGSNVGGGGRGAGGAGCYQCGEFGHLARDCNRGSNAGACYNCGGIGHMARDCTSGRNSGGGGGCYNCGGFGHMARDCLKGGSGGGGGGGSCYKCGEFGHISRDCNVGIGDRGRVGGNGGGCYRCGEVGHLARDCSKEGGNYGGGNGENRTCFNCGKPGHFARECVEASE 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0096 277 SUPERFAMILY Retrovirus zinc finger-like domains 84 140 IPR036875 GO:0003676|GO:0008270
Lal15g0096 277 PANTHER COLD SHOCK PROTEIN 2 162 276 - -
Lal15g0096 277 PANTHER COLD SHOCK PROTEIN 2 1 81 - -
Lal15g0096 277 PANTHER COLD SHOCK PROTEIN 2 83 161 - -
Lal15g0096 277 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lal15g0096 277 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lal15g0096 277 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lal15g0096 277 ProSiteProfiles Zinc finger CCHC-type profile. 125 138 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 Gene3D - 82 117 - -
Lal15g0096 277 ProSiteProfiles Zinc finger CCHC-type profile. 259 272 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 SUPERFAMILY Retrovirus zinc finger-like domains 115 163 IPR036875 GO:0003676|GO:0008270
Lal15g0096 277 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lal15g0096 277 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Lal15g0096 277 Gene3D - 118 165 - -
Lal15g0096 277 SMART c2hcfinal6 228 244 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 SMART c2hcfinal6 93 109 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 SMART c2hcfinal6 198 214 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 SMART c2hcfinal6 258 274 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 SMART c2hcfinal6 171 187 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 SMART c2hcfinal6 124 140 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 SMART c2hcfinal6 146 162 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 Gene3D - 166 217 - -
Lal15g0096 277 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lal15g0096 277 Gene3D - 218 249 - -
Lal15g0096 277 Gene3D - 250 277 - -
Lal15g0096 277 ProSiteProfiles Zinc finger CCHC-type profile. 94 107 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 ProSiteProfiles Zinc finger CCHC-type profile. 172 185 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 81 - -
Lal15g0096 277 PANTHER COLD SHOCK DOMAIN PROTEIN 2 162 276 - -
Lal15g0096 277 PANTHER COLD SHOCK DOMAIN PROTEIN 2 83 161 - -
Lal15g0096 277 SUPERFAMILY Retrovirus zinc finger-like domains 224 274 IPR036875 GO:0003676|GO:0008270
Lal15g0096 277 ProSiteProfiles Zinc finger CCHC-type profile. 147 162 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Lal15g0096 277 Gene3D - 6 81 IPR012340 -
Lal15g0096 277 SUPERFAMILY Retrovirus zinc finger-like domains 165 214 IPR036875 GO:0003676|GO:0008270
Lal15g0096 277 ProSiteProfiles Zinc finger CCHC-type profile. 229 244 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 SMART csp_8 7 72 IPR011129 GO:0003676
Lal15g0096 277 Pfam Zinc knuckle 124 138 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 Pfam Zinc knuckle 198 212 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 Pfam Zinc knuckle 146 162 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 Pfam Zinc knuckle 171 185 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 Pfam Zinc knuckle 93 107 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 Pfam Zinc knuckle 257 272 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 Pfam Zinc knuckle 228 244 IPR001878 GO:0003676|GO:0008270
Lal15g0096 277 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Lal15g0096 277 ProSiteProfiles Zinc finger CCHC-type profile. 199 212 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0096 Lal-Chr15 655383 656216 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lal15g0096 CSD 4.9e-22 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0096 K09250 - gmx:100806783 288.115