Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0094 ATGGTGCTCGAGGCTACAATGATCTGTATTGACAATTCCGAATGGATGCGTAACGGAGATTACTCTCCTTCTCGATTTCAAGCTCAAGCAGACGCTGTAAATCTTATTTGTGGTGCTAAAACCCAGTCTAATCCAGAAAATACAGTTGGGGTTCTCACAATGTCTGGGAAAGGTGTTCGCGTTTTGGTCACCCCTACTAGTGATCTGGGCAAGATCTTAGCTTGCATGCATGGACTAGAAATAGGTGGTGAGATGAACCTAGCTGCGGGCATTCAGGTGGCACAGTTGGCTCTTAAGCATCGGCAAAATAAAAAGCAGCAACAAAGAATTATTGTTTTTGCTGGAGGGCCTGTAAAGCTTGAAAAGAAAATGTTGGAGATGATAGGGAGGAAGTTGAAAAAGAATAGTGTAGCTCTTGATATTATTGATTTTGGTGAAGAAGATGAAGGGAAAACAGAAAAGCTGGAGGCACTCCTTGCTGCTGTTAACAATAATGATACTAGCCACATTGTTCATGTTCCAGCTGGTCCAAATGCTCTTCCTGATGTACTTATAAGTACACCTATTTTCACTGGTGATGGGGAAGGAGGAAGTGGGTTTGCTGCTGCAGCAGCTGCAGCTGGTGGTGTATCTGGATATGAATTTGGAGTGGATCCAAACTTGGATCCTGAACTGGCTCTTGCTCTAAGGGTTTCAATGGAAGAAGAGAGGGCAAGGCAGGAAGCAGCAGCGAAAAAGGCTGCAGAGAATGCTGCTAAACAAGAGAAAGGAGGTGAACAGCAAGCCAGTTCACAAGATGCAACAATGACTGAGCGCGCCGGTGCAGCAACTTCTGAAGCTGAGAATAAGACAAATGATTTGATGGATGACGAAAATGCCTTGCTAGAGCAGGCACTTGCAATGTCAATGGATGATCCTGCCACTAGCCATGATGTGAAAGATACAGATATGTCAGAAGCAGCTTCAGATGATCCTGAATTGGCTCTAGCTCTCCAATTGTCAGTAGCAGATAGTACAAAGGATGCAGCAGGCCAGTCAGACATGAGCAAATTGTTGGCAGATGAATCCTTTGTATCTTCTATCCTTGCATCACTTCCTGGGGTTGACCCTAATGATCCTTCTGTCAGAGATTTGCTTGCCTCCATGCAAAATCAATCTGAGCCTGAGAAGAAGAATGATGAGAAGCCATCATCAAATGAAGAGGAGAAGAAATAA 1215 0.4428 MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLTMSGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGGPVKLEKKMLEMIGRKLKKNSVALDIIDFGEEDEGKTEKLEALLAAVNNNDTSHIVHVPAGPNALPDVLISTPIFTGDGEGGSGFAAAAAAAGGVSGYEFGVDPNLDPELALALRVSMEEERARQEAAAKKAAENAAKQEKGGEQQASSQDATMTERAGAATSEAENKTNDLMDDENALLEQALAMSMDDPATSHDVKDTDMSEAASDDPELALALQLSVADSTKDAAGQSDMSKLLADESFVSSILASLPGVDPNDPSVRDLLASMQNQSEPEKKNDEKPSSNEEEKK 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0094 404 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 404 - -
Lal15g0094 404 SUPERFAMILY vWA-like 4 173 IPR036465 -
Lal15g0094 404 Coils Coil 230 250 - -
Lal15g0094 404 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 220 239 IPR003903 -
Lal15g0094 404 Pfam Ubiquitin interaction motif 290 305 IPR003903 -
Lal15g0094 404 Pfam Ubiquitin interaction motif 322 337 IPR003903 -
Lal15g0094 404 Pfam Ubiquitin interaction motif 222 235 IPR003903 -
Lal15g0094 404 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Lal15g0094 404 SMART uim 220 239 IPR003903 -
Lal15g0094 404 SMART uim 322 341 IPR003903 -
Lal15g0094 404 SMART uim 290 309 IPR003903 -
Lal15g0094 404 MobiDBLite consensus disorder prediction 363 404 - -
Lal15g0094 404 MobiDBLite consensus disorder prediction 240 287 - -
Lal15g0094 404 Pfam von Willebrand factor type A domain 6 116 IPR002035 -
Lal15g0094 404 MobiDBLite consensus disorder prediction 387 404 - -
Lal15g0094 404 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Lal15g0094 404 Gene3D - 218 304 - -
Lal15g0094 404 SMART VWA_4 2 175 IPR002035 -
Lal15g0094 404 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 322 341 IPR003903 -
Lal15g0094 404 MobiDBLite consensus disorder prediction 256 282 - -
Lal15g0094 404 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 404 - -
Lal15g0094 404 CDD VWA_26S_proteasome_subunit 1 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0094 Lal-Chr15 645295 649366 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0094 K03029 - gmx:100814594 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0135 16 803690 812810 Lal15g0094 15 645295 649366 LSH
Lal15g0094 15 645295 649366 Lal23g1474 23 15072836 15077472 LSH