Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0085 ATGGCTGAATCTCCATTACCACCACCAACAAGAATGAATTCAAGGTCCCCTTCTCCATGGAGAGCTCAGTCAAGGTCGAGATCCCGATCAAGGTCTAGATCTAGGCCTAGGTCTAGGTCAAGATCTATTCCAAGACAGAGGCCTAGATCCCATTCACAAAGTCGTGGCAGATCAAGAGAAAGAAGCCCCGAAAGGACTGAGGTAAACAATCCTGGAAACACACTTTATGTGACTGGCTTATCTTCCAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCTCGAAGGAGGGAAAAGTTGCTTCTTGTTTTCTTGTGGTGGAGCCCCGTACGCGTATTTCTCGTGGTTTTGCTTTTATTACAATGGACACTGTTGAGGATGCAAGCCGCTGTGTTAAGTATCTCAATCAATCCGTTTTAGAAGGTCGCCACATCACTGTTGAGCGGTCACGAAGAAAGCGACCAAGAACTCCTACTCCAGGACACTATCTTGGACTTAAAAATACGAGAGATTCTGGATATCATGGTGACCATGGAGATCGTGGTGGACGTGGAGATCGTGGAGATCGTGGTGGCCGTGGAGATCGTGGTGATCATGGAAGGTATCGAGGTGGATCAGGTCGTGATGATTATCAATATTGTCGTTCTCCAAGGCGTTCACCTTATCAAGGTGGCAGGGTTTATTCACCAAGGCACTCGCCCTATGGTGGAAGATCTAGGAGGGATCGGTCAAGGTCACTTCCTTATTCCCCCTACGGGAGCCCAGATCGGAGATACACTCGTGGAGCTAGGTGA 792 0.4861 MAESPLPPPTRMNSRSPSPWRAQSRSRSRSRSRSRPRSRSRSIPRQRPRSHSQSRGRSRERSPERTEVNNPGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDTVEDASRCVKYLNQSVLEGRHITVERSRRKRPRTPTPGHYLGLKNTRDSGYHGDHGDRGGRGDRGDRGGRGDRGDHGRYRGGSGRDDYQYCRSPRRSPYQGGRVYSPRHSPYGGRSRRDRSRSLPYSPYGSPDRRYTRGAR 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0085 263 MobiDBLite consensus disorder prediction 26 52 - -
Lal15g0085 263 MobiDBLite consensus disorder prediction 170 214 - -
Lal15g0085 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 144 IPR000504 GO:0003723
Lal15g0085 263 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 9 259 - -
Lal15g0085 263 Gene3D - 13 158 IPR012677 -
Lal15g0085 263 PANTHER RNA RECOGNITION MOTIF 9 259 - -
Lal15g0085 263 MobiDBLite consensus disorder prediction 145 263 - -
Lal15g0085 263 MobiDBLite consensus disorder prediction 1 76 - -
Lal15g0085 263 CDD RRM_RBMX_like 72 151 - -
Lal15g0085 263 SUPERFAMILY RNA-binding domain, RBD 43 163 IPR035979 GO:0003676
Lal15g0085 263 SMART rrm1_1 74 147 IPR000504 GO:0003723
Lal15g0085 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0085 Lal-Chr15 591450 594495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0085 75 158 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 5.07e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0085 K12897 - gmx:100527350 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0085 15 591450 594495 Lal23g1493 23 15186912 15200603 LSH