Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0077 ATGGGAGGTGATGGTGCTGTTCAATCCGCAGACAATGGAGTCAGTATCAACATTCGATGCTCCAATGGTTCTAAATTTACTGTTCATATAAGCCTTGAATCCACCGTTGGATCTTTCAAGGAGATTATTGCTCGCAATTGCGATATCCCTTCTGATCAACAGCGTCTGATTTACAAGGGTCGCATCCTCAAGGACGATCAAACCCTCAAAACCTATGGTTTGGAGGCGGATCACACTGTCCATCTGGTTCGCGGCTTTACACCTGGCAATACAACTGGTGGGACCAATACTGGTGGTGCTAACACCACATCTAATAATACAAGCAGTGCTGGTGCTAATGAGGGTGGGAGTTTAGGAGGGCCTGGCCTCGGAGCATCGCTGTTCCCTGGACTCGGTATCAATGGACTAGGGGGGAGTAGCGTATTTGGAGAGGGCTTTCCGGATCTTGAACAAATGCAGCAACCATTTTTGTCAAATCCCAATGTAGTTAGAGAAATAATGAACACTCCTGCTATGCAAAATTTAATAAATAATCCCGAGATAGTGCGGAACCTCATAATGAATAACCCACAGATGCAAGAACTTGTGGATCGAAACCCTGAGTTAGCACACATACTTAATGATCCCAACACTCTTCGCCAGACACTTGAAGCTACCAGGAACCCTGAGATCATGCGTGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCCGAGGGATTTAACATGTTGAGGCGGATGTATGAAAATGTTCAAGAACCATTTTTGAATGCCACTACAATGGGTGGTAATACAGCAAATGATAACGCATCAATCTTGGGGACCCAAGGTGGACAAGTCAGGAACCAATCAACTAACCCCTCAACTACTAGTTCTGAAGCAACTTCCCCTGTACCCAATACTAACCCACTTCCCAACCCTTGGTCCTCAATTGGAACTGGAGGTGCCCAAAACAACACCAGAAGGCCAACTACTGGTGGGGATGCTCGACAACAGACACCTACGGGCTTAGGAGGGCTTGCTCTGCCAGATCTTGAAGGCATGTTGGGCGGTATGCCAGATGCTGCTTTAATGACCCAATTAATGCAAAATCCAGCTATTTCTCAAATGATGCAAAGTATGCTTTCCAATCCACAGACTATGAATCAGATTCTTGGTGTCAATGCTGGGCAGCGTGGCATGCCTGATATGAATTCTCTTAGAGAAGTCATGCAGAACCCAGAGTTTCTTCGCCTGTTTTCCTCACCCGAGACACTGCAGCAACTTATGTCTTTCCAGCAAGCTCTTCTGCCCCAGCTTGGTCAGCAACAATCAACCCGGGAACCTGGTCAACCTGGTGCTGGCACTGGACCATTGAACAACATGGGGCTGGAGATGTTATCAAGCATGCTTGGTGGACTTGGAGCCGGTAGCTTAGCTGTTCCAAACCGATCAAATGAGCCACCTGAGCAATTGTATGCCACCCAACTTTCACAGCTTCAAGAGATGGGGTTCTTCGACACACAAGAGAACATAAGGGCTCTTGTTGCTACCTCAGGGAATGTTCATGCAGCCGTTGAGCGGCTTTTGGGGAACTCTGGTGGACAGTAG 1605 0.4717 MGGDGAVQSADNGVSINIRCSNGSKFTVHISLESTVGSFKEIIARNCDIPSDQQRLIYKGRILKDDQTLKTYGLEADHTVHLVRGFTPGNTTGGTNTGGANTTSNNTSSAGANEGGSLGGPGLGASLFPGLGINGLGGSSVFGEGFPDLEQMQQPFLSNPNVVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELVDRNPELAHILNDPNTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMGGNTANDNASILGTQGGQVRNQSTNPSTTSSEATSPVPNTNPLPNPWSSIGTGGAQNNTRRPTTGGDARQQTPTGLGGLALPDLEGMLGGMPDAALMTQLMQNPAISQMMQSMLSNPQTMNQILGVNAGQRGMPDMNSLREVMQNPEFLRLFSSPETLQQLMSFQQALLPQLGQQQSTREPGQPGAGTGPLNNMGLEMLSSMLGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALVATSGNVHAAVERLLGNSGGQ 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0077 534 Pfam Ubiquitin family 16 83 IPR000626 GO:0005515
Lal15g0077 534 Gene3D - 184 242 - -
Lal15g0077 534 CDD Ubl_Dsk2p_like 14 84 - -
Lal15g0077 534 SUPERFAMILY UBA-like 487 529 IPR009060 GO:0005515
Lal15g0077 534 Pfam UBA/TS-N domain 491 527 IPR015940 -
Lal15g0077 534 SMART CBM 189 228 IPR006636 -
Lal15g0077 534 SMART CBM 135 176 IPR006636 -
Lal15g0077 534 SMART CBM 347 389 IPR006636 -
Lal15g0077 534 SMART CBM 392 427 IPR006636 -
Lal15g0077 534 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 7 532 - -
Lal15g0077 534 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 485 530 IPR015940 -
Lal15g0077 534 MobiDBLite consensus disorder prediction 438 457 - -
Lal15g0077 534 ProSiteProfiles Ubiquitin domain profile. 14 89 IPR000626 GO:0005515
Lal15g0077 534 SMART uba_6 491 529 IPR015940 -
Lal15g0077 534 MobiDBLite consensus disorder prediction 86 117 - -
Lal15g0077 534 MobiDBLite consensus disorder prediction 86 114 - -
Lal15g0077 534 Gene3D - 4 96 - -
Lal15g0077 534 MobiDBLite consensus disorder prediction 264 337 - -
Lal15g0077 534 Gene3D - 473 534 - -
Lal15g0077 534 MobiDBLite consensus disorder prediction 264 344 - -
Lal15g0077 534 SMART ubq_7 14 85 IPR000626 GO:0005515
Lal15g0077 534 PANTHER UBIQUILIN 7 532 - -
Lal15g0077 534 CDD UBA_PLICs 491 529 - -
Lal15g0077 534 SUPERFAMILY Ubiquitin-like 5 100 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0077 Lal-Chr15 538340 543262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0077 14 83 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.286 5.47e-08 50.1