Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0064 ATGGGTCACCATTCTTGCTGTAACCAACAGAAGGTTAAGAGAGGCCTTTGGTCCCCTGAGGAAGATGAGAAACTCATCAGATACATCACCACTCATGGCTATGGCTGTTGGAGTGAAGTTCCTGACAAAGCTGGGCTTCAAAGGTGTGGAAAGAGTTGTAGACTGAGATGGATAAATTATCTGAGACCGGATATTAGAAGAGGCAGGTTCACACTTGAGGAAGAGAAGTTAATTATAAGCCTTCATGGGGTTGTTGGAAACAGATGGGCTCACATTGCTAGTCACTTACCTGGTAGAACCGATAATGAAATAAAGAATTATTGGAATTCTTGGATAAAAAAGAAAACACAAAAGCATTCAGCAGTGACTTCATCCAACCCCATTGCACAAAGTGTTGATCATCCTCACCAGTTCAATTATAATTCCAATCAAGAAGTACTGGATCATCAGTTTGTTAACCAAAATAATCTAACTATAACAGCAAAAACACCCCTTCAAGAAACCTTATTTCCTTCCACTACATGCCCCTTATTTATGTTTGACACTAGTTCATCAGATACTGGGAATGGAAGATCAGAACAACTCTTTCAAGATACTACTAATGATTGTTTGAGCTCCCAAACATGGACTTTGAGCCACCATCAAGTTCAAGCACTTCCTCCTCATACACTACCTACTTTCACACCATCTTCGGTTATGGATAGTGCAAATTATCTTCCACCATTGATTGAGAACATTGAGGACATGGTTCCAAATGATGAAGTACATCATTGCAGTATAGATGAGGAAGAAGAAATAACACTGGAGTGCCTGCAGAGGCAAGAGTTTAATCAATTATGGGTGGAGACACAGCAACAATGTCCCAGCTTTCTTTTTTGGGACAATCTTGAAGGACAACTTGGAGGGGAAGCACTAGTGCCAACTTCATCAAATATGGAAATAAACACACTTTCTCCTTTTCCTTCTACTCTCTGA 975 0.4021 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPDKAGLQRCGKSCRLRWINYLRPDIRRGRFTLEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKTQKHSAVTSSNPIAQSVDHPHQFNYNSNQEVLDHQFVNQNNLTITAKTPLQETLFPSTTCPLFMFDTSSSDTGNGRSEQLFQDTTNDCLSSQTWTLSHHQVQALPPHTLPTFTPSSVMDSANYLPPLIENIEDMVPNDEVHHCSIDEEEEITLECLQRQEFNQLWVETQQQCPSFLFWDNLEGQLGGEALVPTSSNMEINTLSPFPSTL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0064 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal15g0064 324 Gene3D - 6 66 - -
Lal15g0064 324 CDD SANT 69 112 IPR001005 -
Lal15g0064 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal15g0064 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal15g0064 324 CDD SANT 17 61 IPR001005 -
Lal15g0064 324 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lal15g0064 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal15g0064 324 PANTHER MYB TRANSCRIPTION FACTOR 1 322 - -
Lal15g0064 324 PANTHER MYB DOMAIN PROTEIN 55 1 322 - -
Lal15g0064 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal15g0064 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal15g0064 324 SMART sant 66 114 IPR001005 -
Lal15g0064 324 SMART sant 13 63 IPR001005 -
Lal15g0064 324 Gene3D - 69 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0064 Lal-Chr15 447195 449504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0064 1 306 MYB Transcription Factor Family AT1G63910 47.541 6.75e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal15g0064 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0064 K09422 - gmx:100797787 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0064 15 447195 449504 Lal15g0064 15 447195 449504 ECH
Lal15g0064 15 447195 449504 Lal16g1194 16 8228029 8231010 PCT
Lal15g0064 15 447195 449504 Lal15g1413 15 16272262 16274995 PCT