Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0059 ATGGGTAACAGCTGCAGCAGCGGCGGCGGATCCGGCGGCAGCACCACCCAACTGAACTCCGAACCCTCCAATCCTAATTCCAATGGCATCTCTGTCCTCCCTCCTCATTCAAAACCCTCACCCTCCAAATCACCCCTTCCTTCCTCAACAACATCTTCCATGGGCCGCATCTTGGGTCGGCCCATGGAAGATGTCCGTGCCACTTATGTCTTCGGCCGCGAACTCGGCCGAGGACAATTTGGAGTAACCTACCTGGTCACACATAAATTGACCAAAGAACAATTCGCGTGCAAGTCAATCGCCACGCGCAAGCTCATCCACCGTGACGATATCGATGATGTTCGCCGTGAGGTTCAGATCATGCACCATCTCACCGGTCACCGTAACATTGTTGAGCTCAAAGCTGCTTATGAGGACCGCCACTCCGTCAACCTCATCATGGAGCTCTGCGCCGGCGGCGAGCTCTTTGATAGGATCATCGCTAAGGGACATTACTCTGAGCGTGCTGCAGCGAACTTGTGCCGCCAGATCGTGACGGTGGTGCATAACTGTCACACCATGGGAGTTATGCATCGGGATCTGAAACCTGAGAATTTCTTGTTTCTCAGTAAGGATGAGAGTTCTCCTCTTAAAGCTACTGATTTTGGTCTTTCAGTGTTTTTCAAGCCAGGAGATGTATTTAAAGATTTAGTGGGGAGCGCTTATTATGTTGCTCCTGAGGTGCTGCGGAGAAGTTATGGACCTGACGCCGATATTTGGAGTGCTGGTGTTATCTTGTACATTCTCCTCTCTGGTGTACCTCCCTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTGTTCTTCATGGACATATTGATTTCGCATCAGATCCTTGGCCTTCTGTATCAACTAATGCTAAAGATCTGGTCAAGAAGATGTTACAAGCTGACCCTAAAGAACGACTTTCAGCCGTTAATGTCCTCAATCATCCATGGATGAGAGAAGATGGAGCATCTGATAAGCCTCTTGATATTGCTGTTTTATCCAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAGAAAGTAGCTTTGAAGGTTATTGCCGAAAATCTTTCTGAGGAAGAAATCATTGGCTTGAAGGAAATGTTCAAATCCATGGACACTGATAATAGTGGAACAATCACTTTTGAAGAGTTGAAAACTGGTCTCCCGAAATTGGGTACTAAGCTTTCCGAGTCTGAAGTGAGGCAGTTGATGGAAGCGGCTGATGTAGATGGAAATGGAACAATAGATTATATCGAATTTATAACAGCTACCATGCACATGAATAGAGTGGAAAGAGAGGACCACCTATATAAAGCCTTTGAATATTTTGACAGTGATAGAAGCGGGTACATCACAACGGAAGAATTGGAATCTGCCCTTAAGAAATATAATATGGGTGATGAGAAAACAATAAAGGAGATCATTGCTGAAGTTGACACAGACCATGATGGAAGAATTAACTATGATGAGTTTGTAGCTATGATGAGGAAAGGGAACCCAGAGTTGGTAGGCAACAACAGACGTCGCAAATGA 1563 0.4575 MGNSCSSGGGSGGSTTQLNSEPSNPNSNGISVLPPHSKPSPSKSPLPSSTTSSMGRILGRPMEDVRATYVFGRELGRGQFGVTYLVTHKLTKEQFACKSIATRKLIHRDDIDDVRREVQIMHHLTGHRNIVELKAAYEDRHSVNLIMELCAGGELFDRIIAKGHYSERAAANLCRQIVTVVHNCHTMGVMHRDLKPENFLFLSKDESSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPDADIWSAGVILYILLSGVPPFWAENEQGIFDAVLHGHIDFASDPWPSVSTNAKDLVKKMLQADPKERLSAVNVLNHPWMREDGASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKTGLPKLGTKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRVEREDHLYKAFEYFDSDRSGYITTEELESALKKYNMGDEKTIKEIIAEVDTDHDGRINYDEFVAMMRKGNPELVGNNRRRK 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0059 520 ProSitePatterns EF-hand calcium-binding domain. 489 501 IPR018247 -
Lal15g0059 520 ProSiteProfiles EF-hand calcium-binding domain profile. 369 404 IPR002048 GO:0005509
Lal15g0059 520 SMART serkin_6 69 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g0059 520 ProSiteProfiles EF-hand calcium-binding domain profile. 405 440 IPR002048 GO:0005509
Lal15g0059 520 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 511 - -
Lal15g0059 520 ProSitePatterns EF-hand calcium-binding domain. 418 430 IPR018247 -
Lal15g0059 520 Pfam EF-hand domain pair 374 434 IPR002048 GO:0005509
Lal15g0059 520 Pfam EF-hand domain pair 444 506 IPR002048 GO:0005509
Lal15g0059 520 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 1 33 511 - -
Lal15g0059 520 CDD STKc_CAMK 69 326 - -
Lal15g0059 520 SMART efh_1 409 437 IPR002048 GO:0005509
Lal15g0059 520 SMART efh_1 480 508 IPR002048 GO:0005509
Lal15g0059 520 SMART efh_1 373 401 IPR002048 GO:0005509
Lal15g0059 520 SMART efh_1 445 473 IPR002048 GO:0005509
Lal15g0059 520 Gene3D - 335 509 - -
Lal15g0059 520 Gene3D Phosphorylase Kinase; domain 1 71 154 - -
Lal15g0059 520 MobiDBLite consensus disorder prediction 1 56 - -
Lal15g0059 520 ProSitePatterns EF-hand calcium-binding domain. 382 394 IPR018247 -
Lal15g0059 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Lal15g0059 520 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Lal15g0059 520 ProSiteProfiles EF-hand calcium-binding domain profile. 441 475 IPR002048 GO:0005509
Lal15g0059 520 Gene3D Transferase(Phosphotransferase) domain 1 155 334 - -
Lal15g0059 520 ProSiteProfiles Protein kinase domain profile. 69 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g0059 520 MobiDBLite consensus disorder prediction 1 59 - -
Lal15g0059 520 Pfam Protein kinase domain 69 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal15g0059 520 SUPERFAMILY Protein kinase-like (PK-like) 68 336 IPR011009 -
Lal15g0059 520 ProSiteProfiles EF-hand calcium-binding domain profile. 476 511 IPR002048 GO:0005509
Lal15g0059 520 SUPERFAMILY EF-hand 365 506 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0059 Lal-Chr15 421528 427319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0059 55 518 EF-hand Containing Proteins AT4G23650 82.366 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal15g0059 Pkinase 1.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0059 K13412 - gmx:100817321 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0059 15 421528 427319 Lal15g0059 15 421528 427319 ECH
Lal15g0059 15 421528 427319 Lal23g1546 23 15561961 15567065 LSH