Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0052 ATGGGATCATCATCAATCTTTCAAGAAGAAGGGTCATCTTCTGTAACCTCTTCTTCACCTCTACAATTCTTCTCTATGATGTCACTTTCACCTAGCTTAGGTTCTCCTTACACATGGCTTAGAGAAATGAAATCTGAGGAAAGGGGTTTGTGTTTGATTCATTTGTTGCTCACTTGTGCTAACCATGTAGCTGCTGGTAGTCTGGAAAATGCAAACATCACACTTGAGCAAATTTCGCAGCTCGCCTCGCCTGATGGTGATACTATGCAGCGAATTGCTGCTTACTTTACCGAAGCACTCGCTGATCGGATGCTGAAAGCGTGGCCTGGCCTCCACAGGGCCCTCAATTCTACCAAGATGGTTATGGTTTCTGAAGAAATTCTTGTCAAGAAGCTCTTCCTCGAGTTGTTCCCGTTCTTGAAGGTTGCGTATATTTTGACGAATCAGGCTATTGTTGAAGCGATGGAAGGGGAGAAAATGGTACATATAGTTGATCTCAATGCCACTGAACCTATGCAGTGGATTGCTCTCCTCCAAGTCTTGAGTGCACGTCCCGAAGGCCCGCCCCATTTGAGAATTACTGGTGTTCATCAGCATAAAGAGATACTTGATCAGATGGCTCATAAACTTACTGAAGAAGCAGAAAAGTTGGATATCCCATTCCAATTCAATCCAGTGTATAGTAAATTAGGAAACCTTGATTTCGACAAACTTCGTGTCAAAACCGGGGAGGCGCTAGCAATAAGTTCTTCTCTGCAATTACATTCCCTTCTGGCCTTGGATGATGAAGCCTTGCGAAGAAAATCTCCCCTCCTGTCAAAAAATTCACTGCAAAAGACATTGCTGATGAACCAAAGCATGTCGGGTGATTTGTTTGAAAAAAATATGGTTAATGGCTATAGCCCAAGCTCTGACTCAGCCTCATCATCACCGGTATCTTTAACCGCTTCAATTAACTCAGAGAGCTTTCTTAATGCTTTATGGGGATTGTCACCAAAGATCATGGTTGTAACAGAACAAGACTTCAACCATAATGGTTCAACACTGATGGAAAGGCTGCTAGAATCGCTATATTCTTATGCAGCATTGTTTGATTGTTTGGAGTCAACCAGCTCAAGAGCGTCGTTGGAGAGATTCAAGGTGGAGAAGATGCTTTTCGGCGAGGAAATCAAGAACATTATTGCTTGTGAAGGGGCTGAAAGAAAGGAAAGACATGAGAAGCTGGATAAATGGTTCCGAAGACTTGATTCATCCGGATTCGGCAACGTGCCTTTAAGCTATTTTGGCATGTTGCAGGCAAGGAGGTTCCTACAGACCTATGGTTGTGAGGGATATAGGATAAAGGAGGAAAATGGTTGTGTAGTAATTTGCTGGCAGGACCGCTCCTTGTACTCGATATCGGCTTGGAGGTCTAGAAAGTAA 1422 0.4346 MGSSSIFQEEGSSSVTSSSPLQFFSMMSLSPSLGSPYTWLREMKSEERGLCLIHLLLTCANHVAAGSLENANITLEQISQLASPDGDTMQRIAAYFTEALADRMLKAWPGLHRALNSTKMVMVSEEILVKKLFLELFPFLKVAYILTNQAIVEAMEGEKMVHIVDLNATEPMQWIALLQVLSARPEGPPHLRITGVHQHKEILDQMAHKLTEEAEKLDIPFQFNPVYSKLGNLDFDKLRVKTGEALAISSSLQLHSLLALDDEALRRKSPLLSKNSLQKTLLMNQSMSGDLFEKNMVNGYSPSSDSASSSPVSLTASINSESFLNALWGLSPKIMVVTEQDFNHNGSTLMERLLESLYSYAALFDCLESTSSRASLERFKVEKMLFGEEIKNIIACEGAERKERHEKLDKWFRRLDSSGFGNVPLSYFGMLQARRFLQTYGCEGYRIKEENGCVVICWQDRSLYSISAWRSRK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0052 473 Pfam GRAS domain family 52 470 IPR005202 -
Lal15g0052 473 ProSiteProfiles GRAS family profile. 43 470 IPR005202 -
Lal15g0052 473 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 472 IPR005202 -
Lal15g0052 473 PANTHER SCARECROW-LIKE PROTEIN 3 7 472 IPR030008 GO:0003700|GO:0005634|GO:0009739
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0052 Lal-Chr15 375951 377372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0052 5 473 GRAS Transcription Factor Family AT1G50420 66.390 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lal15g0052 GRAS 2.2e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0052 - - tcc:18589932 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0177 16 1062671 1067736 Lal15g0052 15 375951 377372 LSH
Lal15g0052 15 375951 377372 Lal23g0226 23 2108232 2115619 LSH
Lal15g0052 15 375951 377372 Lal23g1560 23 15651276 15652679 LSH
Lal15g0052 15 375951 377372 Lal23g0226 23 2108232 2115619 PCT
Lal23g0226 23 2108232 2115619 Lal15g0052 15 375951 377372 PCT