Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0040 ATGGAAGAAGGAAGCACCACCCAAGAATGTGTCATGACAACAACAACAAGAACAAAAACATCGTATCATGGAGTTCGGAAAAGGAAATGGGGGAAATGGGTGTGTGAAATACGTGAACCAGGAAAGAAAAGTAGAATATGGTTAGGGAGTTATGAAGCACCAGAAATGGCGGCAGCAGCATATGATGTAGCAGCATTTCACCTCAAAGGAAAGGCAGCGAGGCTCAACTTTCCAGAATTAGTTGAGACATTGCCTAAGCCAGTAACATCCAAAGCTATGGATGTGCAAATTGCAGCTCAACAAGCAGCATTGCACTTTAAGAAACCTAATTCATTAGCTGATGATAATAAAAGTAGCAGTGTGGTTCCGATGAGGGTGGGGTTGTCACCCACACAAATTCAAGCCATTAATGACTCTCCATTGGATTCACCAAAGATGTGGATTCACCAAATATGTGGGTTTGATTATGAGTCTATGATGTATTCTAATCATGAAAATGTTCTACAGCTCAGTGGTTGGGAAGAAATACAGTATGAGTCCTTATGGGATTTTTGA 555 0.4108 MEEGSTTQECVMTTTTRTKTSYHGVRKRKWGKWVCEIREPGKKSRIWLGSYEAPEMAAAAYDVAAFHLKGKAARLNFPELVETLPKPVTSKAMDVQIAAQQAALHFKKPNSLADDNKSSSVVPMRVGLSPTQIQAINDSPLDSPKMWIHQICGFDYESMMYSNHENVLQLSGWEEIQYESLWDF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0040 184 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Lal15g0040 184 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Lal15g0040 184 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Lal15g0040 184 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Lal15g0040 184 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
Lal15g0040 184 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Lal15g0040 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 182 - -
Lal15g0040 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 13 182 - -
Lal15g0040 184 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Lal15g0040 184 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0040 Lal-Chr15 310206 310760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0040 20 183 AP2-EREBP Transcription Factor Family AT1G71450 49.405 6.63e-54 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal15g0040 AP2 2.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0040 - - lang:109333165 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0061 16 372052 372645 Lal15g0040 15 310206 310760 LSH