Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0016 ATGACTGTGTTTGAAGTGGTATTTGCAGTAAAACATATTCCTTATCATTCAACCAATTTAAACATTACAACTTTACTTTTCAAAGAAAATCTCTATGGATCGTTAAATAAAAGTCTATTTTGTAATATATTTAAGCTAATTATTCGTTCAAACAATAGTTTTAGAAGGTTGTTTGAAAAAGAAGAGAGAAGAAGAGAGAAGAATAGAGAGAAGAAGAGAGAAGAAGAGAGAAGAGTGATGGTTATGGAGGATATTGAGAGGGGTGAGAGAAAAGGGCAGAAGAGGAAGCAAGTGGATGAATATGAATTCTGTAACTTATCCTCCGACGTTGCCCAACAGGTTTCCATTCTCGTCTCTTCCTTCTCTTCCAACGAGTCTGATCGTGCCGCCGCTAAGCGTGCCACTCACCTCCTCGCTCATCTCGCTCAAAATGACCATCTAGTTAATTTCATCGTTGAAGCTGGTGCTATTCCCGCTCTCGTTATGCATCTTCAACCACCTCCTTTACTTCCAAATCATTCTTCATTGCCGTTTCACCATGAGGTTCAGAAAGGGAGTGCTTTTGCTCTTGCTCTTCTTGCCGTCAAGCCAGAACATCAACACTTCATTGTTCACAATGGTGCCTTAAAACATCTCGTTACTCTTTTGAAAACCCACAATACTTCCCTTACATCTCGTGCCGTTAATAGTCTTATCCGTAGGGCTGCAGATGCCATCACTAATCTTGCTCACGAGAACAGCACCATCAAAACCCGTGTTAGGATGGAAGGTGGAATCCCACCACTCGTTCACTTGCTCCAACTGCCTGATACAAAAGTACAAAGGGCTGCTGCCGGTGCTTTGCGAACCCTGGCTTTTAAAAATGATGAAAATAAAAATGAGTATGTCACTAAACTAAACATCACAACTTACCAGATTGTTGAATGCAATGCTCTTCCAACTCTCATTCTAATGCTTCGTTCCGAAGATGCTGCTGTTCATTATGAAGCGGTTGGTGTTCTTGGAAATCTGGTCCACTCTTCTCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCCTTACAACCTGTTATTGGGTTACTTAGCTCCTGCTGCTCTGAAAGCCAGAGGGAAGCAGCTTTGTTACTTGGGCAGTTTGCTGCAACTGATTCAGACTGCAAGGCAAGCATACACTTTACTGTTCACATTGTACAGAGAGGTGCAGTCAGGCCTCTGATAGATATGCTCCAGTCCCCTGATGTACAGCTCAGAGAAATGTCTGCCTTTGCATTGGGGAGATTGGCCCAGGATTCACATAACCAAGCTGGTATTGCACACAGTGGTGGCTTAATACCATTGCTGAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTACGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTAGGTGGAATTCAGAAATTGCAGGAAGGAGAGTTTATAGTTCAAGTAAGTTTGCCTCTTAAATACCTTGACAGTAGTGTTGATGTCCGGGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAGATTAATGGATGTGTGCTGAACCATTTGTTACATCTTATGCGAGATTCAGAAAAGGCTTTCCAAAGAAAAGTTGCTTTGGCTCTTGCTCATCTTTGTTCCCCGGATGATCAGAGAAAAATATTTATCGATCACCATGGTTTGGAGTTGCTTATTGGGCTTCTTGGCTCTTCCAGCCCTAAGCAGCAACTTGATGGTGCAGTGGCTTTATGGAACTTGGCCAATAAAGCTATGACTCTGTCTCCGATAGATGCTGCGCCTCCTTCTCCAACACCCCAGGTCTATTTAGGAGAGCAGTATGTAAACAATTCTAGTGTGTCTGATGTTACATTCTTGGTTGAAGGCAAACGGTTTTATGCTCACAGAATCTGCCTACTTGCGTCTTCAGATGCATTTCGTGCAATGTTTGACGGTGGTTATCGGGAGAAGGATGCAAGGGATATAGAGATTCCAAATATCAGATGGGAGGTTTTTGAGTTGATGATGAGATTTATATATACTGGGTCAGTTGATGTTACTCTTCATATTGCCCAAGATCTCCTTCAAGCAGCTGATCAATATCTTTTAGAAGGACTTAAGAGACTCTGTGAGTACACGATTGCACAGGATATATCACTTGAGAACGTGTCAAGAATGTATGAATTTTCAGAAGCTTTTAATGCCATATCGTTGAGGCACACATGCATCCTTTTTATGTTGGAGAAATTTGATAAATTGAGTGCAAGGCCAGGACACTCTCATCTGATTCAGCGTGTAATGCCAGAGATACGCAGTTACTTTGTTAAAGCTCTTACAAAGACCAATTCTCACATCCAGCCATAG 2397 0.4159 MTVFEVVFAVKHIPYHSTNLNITTLLFKENLYGSLNKSLFCNIFKLIIRSNNSFRRLFEKEERRREKNREKKREEERRVMVMEDIERGERKGQKRKQVDEYEFCNLSSDVAQQVSILVSSFSSNESDRAAAKRATHLLAHLAQNDHLVNFIVEAGAIPALVMHLQPPPLLPNHSSLPFHHEVQKGSAFALALLAVKPEHQHFIVHNGALKHLVTLLKTHNTSLTSRAVNSLIRRAADAITNLAHENSTIKTRVRMEGGIPPLVHLLQLPDTKVQRAAAGALRTLAFKNDENKNEYVTKLNITTYQIVECNALPTLILMLRSEDAAVHYEAVGVLGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKASIHFTVHIVQRGAVRPLIDMLQSPDVQLREMSAFALGRLAQDSHNQAGIAHSGGLIPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQKLQEGEFIVQVSLPLKYLDSSVDVRATKDCVAKTLKRLEEKINGCVLNHLLHLMRDSEKAFQRKVALALAHLCSPDDQRKIFIDHHGLELLIGLLGSSSPKQQLDGAVALWNLANKAMTLSPIDAAPPSPTPQVYLGEQYVNNSSVSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLHIAQDLLQAADQYLLEGLKRLCEYTIAQDISLENVSRMYEFSEAFNAISLRHTCILFMLEKFDKLSARPGHSHLIQRVMPEIRSYFVKALTKTNSHIQP 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0016 798 Pfam Armadillo/beta-catenin-like repeat 305 338 IPR000225 GO:0005515
Lal15g0016 798 Pfam Armadillo/beta-catenin-like repeat 253 285 IPR000225 GO:0005515
Lal15g0016 798 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 86 794 - -
Lal15g0016 798 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 257 292 IPR000225 GO:0005515
Lal15g0016 798 SUPERFAMILY POZ domain 624 726 IPR011333 -
Lal15g0016 798 Pfam BTB/POZ domain 625 727 IPR000210 GO:0005515
Lal15g0016 798 Gene3D - 228 300 IPR011989 -
Lal15g0016 798 ProSiteProfiles BTB domain profile. 632 699 IPR000210 GO:0005515
Lal15g0016 798 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 86 794 IPR044282 -
Lal15g0016 798 Coils Coil 57 78 - -
Lal15g0016 798 CDD BTB_POZ_ARIA_plant 619 734 - -
Lal15g0016 798 SMART BTB_4 632 729 IPR000210 GO:0005515
Lal15g0016 798 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 310 352 IPR000225 GO:0005515
Lal15g0016 798 SUPERFAMILY ARM repeat 231 600 IPR016024 -
Lal15g0016 798 SMART arm_5 388 429 IPR000225 GO:0005515
Lal15g0016 798 SMART arm_5 560 600 IPR000225 GO:0005515
Lal15g0016 798 SMART arm_5 299 339 IPR000225 GO:0005515
Lal15g0016 798 SMART arm_5 341 381 IPR000225 GO:0005515
Lal15g0016 798 SMART arm_5 196 244 IPR000225 GO:0005515
Lal15g0016 798 SMART arm_5 144 195 IPR000225 GO:0005515
Lal15g0016 798 SMART arm_5 430 470 IPR000225 GO:0005515
Lal15g0016 798 SMART arm_5 246 286 IPR000225 GO:0005515
Lal15g0016 798 Gene3D - 102 227 IPR011989 -
Lal15g0016 798 Gene3D - 501 608 IPR011989 -
Lal15g0016 798 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 207 257 IPR000225 GO:0005515
Lal15g0016 798 Gene3D Potassium Channel Kv1.1; Chain A 613 758 IPR011333 -
Lal15g0016 798 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 441 483 IPR000225 GO:0005515
Lal15g0016 798 Gene3D - 390 491 IPR011989 -
Lal15g0016 798 Gene3D - 301 389 IPR011989 -
Lal15g0016 798 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 400 442 IPR000225 GO:0005515
Lal15g0016 798 SUPERFAMILY ARM repeat 104 233 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0016 Lal-Chr15 159895 166936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0016 243 489 U-box Gene Family AT2G23140 28.745 1.69e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lal15g0016 BTB 1e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0016 - - gmx:100819832 1065.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0016 16 112940 121796 Lal15g0016 15 159895 166936 LSH