Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g2008 ATGGAACTTTCCGTTCAAGAAGGAGAAATCCCAATTCCACTCCCAATAAACATTACAGCTACTACTACTAGCTATGGAGGTGGTGGACATGGGCATCTACACAACATGATTCCTCCTCCTCCTCCTCCACAAAACCCTTGTTCAGATGGCCAAGAGCAAGAGGATCATCATCATGTTCATGGACGAGGACCCTACAAGCAGCAGAAAGTGGTAAGGTACAGAGAATGCCTAAAGAACCATGCTGCTGCAATGGGAGGGAATGCCACTGATGGTTGTGGTGAGTTCATGCCAAATGGTGAAGATGGCTCCATTGAAGCTTTCAACTGCTCTGCTTGCCATTGCCACCGAAACTTCCACAGAAAAGAAGTAGAAGGTGACCCCTCTCACGAGTTTTTCAACTTCAGCAGGAGGAAATTCCTTCTTGGCCCTCCACATCATCAGAAGAACAACAATATCCAAGCAGCTGCTCCTGAGGTTCTGGGGTACCCTACACCTTCAAGAAGTGTACCACACCACTGCATGGTAATGCCCTACAACATACTTGCAGCTTCAGAATATGATGAACAAGAAGATGGTGGTGTGGGTAGAGCAGCAGCAGCAGCACAGTTAGTGAAGAAAAGGCATAGAACAAAGTTCAGCCAAGAACAGAAGGAGAAAATGCTGAGCTTCGCAGAGAAGGTTGGATGGAAAATCCAGAAGCAAGAGGAGTCAGTGGTGCAACAGTTTTGTCAAGAGATTGGGGTGAAAAGAAGAATGCTCAAGGTTTGGATGCATAACAATAAGAACAATCTTGCCAAAAACAAGCATCATTCTCCACCCCCTTCTTAA 828 0.4601 MELSVQEGEIPIPLPINITATTTSYGGGGHGHLHNMIPPPPPPQNPCSDGQEQEDHHHVHGRGPYKQQKVVRYRECLKNHAAAMGGNATDGCGEFMPNGEDGSIEAFNCSACHCHRNFHRKEVEGDPSHEFFNFSRRKFLLGPPHHQKNNNIQAAAPEVLGYPTPSRSVPHHCMVMPYNILAASEYDEQEDGGVGRAAAAAQLVKKRHRTKFSQEQKEKMLSFAEKVGWKIQKQEESVVQQFCQEIGVKRRMLKVWMHNNKNNLAKNKHHSPPPS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g2008 275 MobiDBLite consensus disorder prediction 28 66 - -
Lal14g2008 275 Pfam ZF-HD protein dimerisation region 71 123 IPR006456 -
Lal14g2008 275 SUPERFAMILY Homeodomain-like 202 266 IPR009057 -
Lal14g2008 275 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 72 123 IPR006456 -
Lal14g2008 275 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 73 122 IPR006456 -
Lal14g2008 275 Gene3D - 192 267 - -
Lal14g2008 275 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 43 267 - -
Lal14g2008 275 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 43 267 - -
Lal14g2008 275 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 205 262 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g2008 Lal-Chr14 18985264 18986091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g2008 1 266 ZF-HD Transcription Factor Family AT1G14440 45.847 4.29e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal14g2008 ZF-HD_dimer 5.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g2008 - - gmx:100805652 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g2008 14 18985264 18986091 Lal7g1490 7 19623257 19624069 LSH
Lal14g2008 14 18985264 18986091 Lal19g1550 19 17697081 17697923 LSH