Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g2006 ATGTCAGAAATGATGATGAGGGTATCTGATCCAAGCAAGCTGCACTTGAAGAAGGAGCTTACTCAAATTCGAAAAGCAGCTCGCGTGTTGAGAGATCCTGGTACTACTTCTTCACTGAAGAAATCACCCCTTACTTCCTCAAGATCTGTGGCACTTCCATCTTCTTCTGCATGCCACAAGAAGAATACAAGTTCTCGACTTGATTCTCATTTTTCTCTAGAAGAGAAAGATAAAGACAAGAATGTGTTTTTGTACAATTGGAAAAACAATGAGCAAGTAGAAGAACAAGAAGAATATGGATCTTTGTCACTTTTGGGAAGTATGGAAGATCGTTTGAGTGATGCTACGAATGGTTGTGACTCAAAGAGTGACACCTACTTAGGCATCTTCAGATGTGTAGATGCAGCAGCAGCAGCAGCATCTGCCATTAATAAAAAAGAGAGTAAGAAACCCAAACCCAATTCTCCACATTTGGATTTTTTAAACAAATATCAACAACATTCACAACACAATAATCTCAATCTAGGTAGTAATATTAGTACAAAGTCCAAGGCATTGCCTTTTACTAGGGATGACTCTGATAATGATACTGAAGAATATTACTCTAATAATTCTGAGCATGTTAGACGAGTTTTTGGGGCTTCTCCTTTCCTTCTCAAACTCAAACGTAACAATTTGTTGAGAAGAAGCACCAAAGAGGACTCTTCTTATTCTTATAGCACTCCTGCACTATCAACCAGTTCCTACAATAGGTGTCTTCACTGTTATCCTAGCACTGTTGGATCCTGGGATGCCACCACAACTTCAATCAATGACCGAGATGATGCCAATGATTACCATTTGGCTTTGCCTGGTCGCCAAGGATGTGGAATTCCTTGCTATTGGTCTAAGAGGACTCTGAAACATCAAGGTGCGTGTAGGAGTTCTTATTCTCCTTCACTTTCGGATACTTTAAGGAGAAAAGGAAGAAGCATACTCTGTGGGAGTCAAAATATTTATCCAAGACACTACAGATCCCCTTCAGCCTCTCACAAGGGCAAAATTTCTTTGGGGAGTGCTCAAGGTGTTATTCCATTGCTCTCTGACAGTGGTGATGTTAGAGGAGGTTCATCCATAGGAATTGGCTGTAGTGATGATGAACTTTCCACAAACTTTGGGGAGCTTGATCTTGAGGGCTTGAGCCGATTGGATGGGATAAGGTGGTCATCGAGTTGTAGGAGTCAACAGGGACTGGAGATTGTAGCTCTCAATGGGGCAGGGGAGGATGATGGCACGCCTGAAAATAGTTGGAGTTTCAGTAAGAAGTATAAGCCTATTTTGTTTGATGAAGTGATTGGGCAGCATATTGTAGTTCAGTCACTTATCAATGCTGTTTCGAGGGGCCGAATTGCTCCCGTTTATCTTTTTCAAGGTCCGCGCGGGACTGGTAAAACATCAACTGCCAGGATATTTGCTGCTGCCTTGAATTGTGTGGCTTCTGATGAGAGTAAGCCTTGTGGTTACTGCCGGGAATGTGCTGATTTTATTTCTGGCAAGAGTAATGATTTACTTGAAGTTTATGGAACCAATAAGAAAGGAATTGATAGAGCTAGATATCTTTTGACAAGATTGCCAATTGGGTCATCATCAGCCTCCTCGCGATATACAGTTTTTGTCATTGATGAATGTCAATTGTTACCCTCCAAGACATGGCTGAGATTTCTCAAGTTTCTCGAAGAACCACCTCAGCAGGTTGTGATCATATTTATAACGTCTGATCTTGACAATGTGCCACGAACAATACAATCTAGATGTCAGAAGTATCTTTTTAACAAAATTAAGGATGTGGATATTGTTGCTAGGTTAAGGAAGATATCTGCTCAAGAGAACCTCGACATTGAAACAGATGCATTAGACCTCATTGCTATGAACGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAACAGCTTAGCTTGCTGGGAAAAGGAATTACTACTTCTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAGAAATTATTGGAACTTTTGGAGTTGGCAATGTCATCAGACACTGCAGAGACAGTGAAAACAGCCAGGGAATTGATGGACTCTGGAATTGATCCAGTGGCTTTAATGTCTCAACTAGCTGACCTCATTATGGACATCATTGCTGGATCATATACTGTTATTGATGCCAAACATGATGATTCATTCTTTGGTGGTCGAACTTTGAATGAATCAGAGTTGGAGAGGTTAAAACATGCTTCGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGTACTTCCAATGAACGCTCAACATTGTTTACTGCAACTCTGTTGCAGCTTGGTTCTATGCCTTCTCCAGATCTTACTCAGCCAGGCAGCAGCAGGCAGCAGAGTTGCAAGACAACAACTGAAGATAATCCGTCTAGTGCTTCAAGAGATGTTACTGCTTGCGAGCATAAGTCAGACCTTCAATATATGCCTCGAAACTCAACATTCCCTGAATCCCAGCACAAATTAGTTAATGGCAATTCCAGCCATAACAAGGATGTATCCTCAAAGATGGATGGTTTTTGGTTGAAATCAAAACCATCAAATAACCTGGTCATAGATGATGGCTCCACAATTGTCTCATCTGATGATCTTATGGTTGGGAATATGATGCTTAGATGCATTAATTCAGGGAAGTTATATGATATCTGGGAGCGATGTATTGGGGGATGCCACTCTAAGACATTGAGACAGCTGCTACACGATCATGGAAAGCTTGTGTCCATATGTGAAGTTGAAGGTAAGCTGACGCTATGGTATTCAAAGTACATAAAGCATCCAATAGTTCATGTATGCATTGTTGTCACTGATGACGACAATCCATTAAGTGCTTGCTCTTGTTTTTTGGTGGCATATGTTGCATTTGGCGATGGACATATTAAGCGTAGGGCTAAGAGGTTTTTGAGAAGTATTACAAACTCCATGGAAATGGTTCTTAGACACAGTGTGGAGGTCAGAATGATCCATTTGCCAGATGGTGAAGATGAAAATCTAGTTAATCTATCTGGTCTAAAGCAGGCAGAGTCTACAGTAGCAAATGAGAAGGGCCAAAGAGGTCATATGAATGGAACAGAATCTTGTTCTAGTTTCCCTCCTTTACTTGATGGAAACCTTCAATGTGCTTTCGATTCGTCAGATATTCTGGCTGAAGGAAATGGTTTGAGGAAGAAGCGACAGGATAATCCAATTCAGAGAATTGAGTCCATCATCCGTGAGCAGAGGCTGGAGACTGCATGGTTGCAGGTTGTTGAAAAAGGTTCCCCTGGACCGCTGAGTCGTTTGAGACTTGAGAAGAATCAAGTCCTGCCACAGGATGGTATCTCTTGTATAGACCCAAAGGAGTCCAGTGTGGATAAAACAAGATATTCCTCTCAGCATTGGGAAGATGAGCTGAATAATGAACTCAAAATGAGTGTTAAAAATGGAAAGGTCCTACAGAAGGATCAGATCGGTAGAAGGGCAGATCGGTACCCCATGTCTCCAAGTTTATTGCATGACAGCAGTTTAGCAATAAGTTCTGGCAAAGACAATGTAGGATATGAATCGAGCTCTGGACCAGGTGGTTGTGGATTTTTATGTTGGAATAATTCCAAGCCTAGAAGTGTTGTGAAGGTAACAGGTGGTACCCCAGTTGGAGTTGGAGTTGGAGTTGGAGTTGGTAAAGAGGGGAATTTTACATTGTTTGGTGAGTGTTGTAAGCCAAAGAAAAAGGACTTGAGAAAATAA 3774 0.4141 MSEMMMRVSDPSKLHLKKELTQIRKAARVLRDPGTTSSLKKSPLTSSRSVALPSSSACHKKNTSSRLDSHFSLEEKDKDKNVFLYNWKNNEQVEEQEEYGSLSLLGSMEDRLSDATNGCDSKSDTYLGIFRCVDAAAAAASAINKKESKKPKPNSPHLDFLNKYQQHSQHNNLNLGSNISTKSKALPFTRDDSDNDTEEYYSNNSEHVRRVFGASPFLLKLKRNNLLRRSTKEDSSYSYSTPALSTSSYNRCLHCYPSTVGSWDATTTSINDRDDANDYHLALPGRQGCGIPCYWSKRTLKHQGACRSSYSPSLSDTLRRKGRSILCGSQNIYPRHYRSPSASHKGKISLGSAQGVIPLLSDSGDVRGGSSIGIGCSDDELSTNFGELDLEGLSRLDGIRWSSSCRSQQGLEIVALNGAGEDDGTPENSWSFSKKYKPILFDEVIGQHIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDESKPCGYCRECADFISGKSNDLLEVYGTNKKGIDRARYLLTRLPIGSSSASSRYTVFVIDECQLLPSKTWLRFLKFLEEPPQQVVIIFITSDLDNVPRTIQSRCQKYLFNKIKDVDIVARLRKISAQENLDIETDALDLIAMNADGSLRDAETMLEQLSLLGKGITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKTARELMDSGIDPVALMSQLADLIMDIIAGSYTVIDAKHDDSFFGGRTLNESELERLKHASKLLSEAEKQLSTSNERSTLFTATLLQLGSMPSPDLTQPGSSRQQSCKTTTEDNPSSASRDVTACEHKSDLQYMPRNSTFPESQHKLVNGNSSHNKDVSSKMDGFWLKSKPSNNLVIDDGSTIVSSDDLMVGNMMLRCINSGKLYDIWERCIGGCHSKTLRQLLHDHGKLVSICEVEGKLTLWYSKYIKHPIVHVCIVVTDDDNPLSACSCFLVAYVAFGDGHIKRRAKRFLRSITNSMEMVLRHSVEVRMIHLPDGEDENLVNLSGLKQAESTVANEKGQRGHMNGTESCSSFPPLLDGNLQCAFDSSDILAEGNGLRKKRQDNPIQRIESIIREQRLETAWLQVVEKGSPGPLSRLRLEKNQVLPQDGISCIDPKESSVDKTRYSSQHWEDELNNELKMSVKNGKVLQKDQIGRRADRYPMSPSLLHDSSLAISSGKDNVGYESSSGPGGCGFLCWNNSKPRSVVKVTGGTPVGVGVGVGVGKEGNFTLFGECCKPKKKDLRK 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g2006 1257 SUPERFAMILY post-AAA+ oligomerization domain-like 671 781 IPR008921 GO:0003677|GO:0006260
Lal14g2006 1257 CDD HLD_clamp_pol_III_gamma_tau 606 669 IPR045085 -
Lal14g2006 1257 Gene3D - 670 784 - -
Lal14g2006 1257 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 431 780 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Lal14g2006 1257 Gene3D - 608 669 - -
Lal14g2006 1257 Gene3D - 424 604 IPR027417 -
Lal14g2006 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 656 IPR027417 -
Lal14g2006 1257 CDD AAA 445 603 - -
Lal14g2006 1257 MobiDBLite consensus disorder prediction 187 203 - -
Lal14g2006 1257 MobiDBLite consensus disorder prediction 184 203 - -
Lal14g2006 1257 PANTHER PROTEIN STICHEL-LIKE 1 962 1190 - -
Lal14g2006 1257 PANTHER PROTEIN STICHEL-LIKE 1 169 932 - -
Lal14g2006 1257 MobiDBLite consensus disorder prediction 781 816 - -
Lal14g2006 1257 Coils Coil 742 769 - -
Lal14g2006 1257 Pfam DNA polymerase III subunits gamma and tau domain III 660 757 IPR022754 GO:0003887
Lal14g2006 1257 MobiDBLite consensus disorder prediction 28 68 - -
Lal14g2006 1257 MobiDBLite consensus disorder prediction 781 814 - -
Lal14g2006 1257 Pfam DNA polymerase III, delta subunit 447 606 - -
Lal14g2006 1257 MobiDBLite consensus disorder prediction 35 62 - -
Lal14g2006 1257 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 169 932 - -
Lal14g2006 1257 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 962 1190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g2006 Lal-Chr14 18962640 18975309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g2006 427 718 Core DNA Replication Machinery Family AT1G21690 23.920 3.63e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g2006 - - gmx:100814391 1624.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g2006 14 18962640 18975309 Lal7g1489 7 19611523 19618559 LSH