LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal14g1987	ATGATGTCGATTTTGTTACCTCAAACTCACAACGTAACCAATATGGTCCCTTCAACACAACTCCTCTTGCTATCATGCTTCTTATTACAATTTGCATCAACCTTTGTTAACTCCTCCTATTCAACACAAAATTACTACTATGTCCCAGAGAGTCCTAAGAAAGCATTGCTCAATGAGATAGATTCTTGTTGGAAGGCAAAATCAAATTGGGCATCAAATCGGCAAGCCTTGGCTGATTGTGCAATTGGATTTGGCAAATATGCAATTGGAGGAAAATATGGTGCAATATATAGAGTCACAGATTCCTCTGATGACCCTATAAACCCAAAACCAGGGACACTTCGTTATGGTGTAATCCAAACACAACCCCTTTGGATAACATTCAGCAAGGACATGGTTATTACATTAGAAAATGAGCTTATAATGAACAGTTATAAGACCATTGATGGGAGAGGAGTTAAAGTGGAGATTTCAAATGGGCCATGCATTACAATACAATATGTTAGTTATGTTATAATACATGGTATTAGCATCCATGATTGTAAACCAGGCAAGAGTGGCCTTGTTAGAAGTACTCCTGAGCATGTTGGTCATCGTCACGGCTCTGATGGAGATGCAATTAGTATATTTTCTTCCTCAAATGTTTGGATTGATCATTGCTATTTTGCTAGTTGCACTGATGGCCTCATTGATATTATTCATGCCTCAACTGCCATTACCATTTCTAACAATTACTTCACCAACCATGACAAAGTTATGCTGCTAGGACACAACGACCAATACACAGCAGATAAAATAATGAAAGTAACAATAGTCTTCAACCATTTTGCTACTGGGCTAATTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCGCATGTGGTGAACAACAAATATGATGAGTGGAAAATGTATGCTATGGGGGGAAGTGCTAACCCAACCATCTTCAGTGAAAGCAACTTCTTTATAGCATCCAATAACCAATTTGCAAAACAGGTTACAAAGAGGGAAGCGAAGAAGAAGTGGAAGAGTTGGAAATGGAGATCATCAAAGGATATATTCCAAAATGGTGCTTATTTTGTACCATCAGGCTATGGAAGTTGTGCACCTAATTACTCACGTGCTCAATCTTTTACTGCTGCACCAGCCTTCACGGTCCCAGCAATCACTCTCAATGCGGGTCCTTTGACTTGTGTTGTTGGTAGAGCATGTTAA	1215	0.3918	MMSILLPQTHNVTNMVPSTQLLLLSCFLLQFASTFVNSSYSTQNYYYVPESPKKALLNEIDSCWKAKSNWASNRQALADCAIGFGKYAIGGKYGAIYRVTDSSDDPINPKPGTLRYGVIQTQPLWITFSKDMVITLENELIMNSYKTIDGRGVKVEISNGPCITIQYVSYVIIHGISIHDCKPGKSGLVRSTPEHVGHRHGSDGDAISIFSSSNVWIDHCYFASCTDGLIDIIHASTAITISNNYFTNHDKVMLLGHNDQYTADKIMKVTIVFNHFATGLIERMPRVRFGYAHVVNNKYDEWKMYAMGGSANPTIFSESNFFIASNNQFAKQVTKREAKKKWKSWKWRSSKDIFQNGAYFVPSGYGSCAPNYSRAQSFTAAPAFTVPAITLNAGPLTCVVGRAC	404

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal14g1987	404	Gene3D	-	57	397	IPR012334	-
	Lal14g1987	404	PANTHER	PECTATE LYASE	15	403	-	-
	Lal14g1987	404	SUPERFAMILY	Pectin lyase-like	58	395	IPR011050	-
	Lal14g1987	404	Pfam	Pectate lyase	142	322	IPR002022	-
	Lal14g1987	404	PRINTS	Pollen allergen Amb family signature	80	97	IPR018082	-
	Lal14g1987	404	PRINTS	Pollen allergen Amb family signature	103	128	IPR018082	-
	Lal14g1987	404	PRINTS	Pollen allergen Amb family signature	139	155	IPR018082	-
	Lal14g1987	404	PRINTS	Pollen allergen Amb family signature	203	224	IPR018082	-
	Lal14g1987	404	PRINTS	Pollen allergen Amb family signature	283	302	IPR018082	-
	Lal14g1987	404	PRINTS	Pollen allergen Amb family signature	305	324	IPR018082	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal14g1987	Lal-Chr14	18851293	18859687	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal14g1987	21	404	Polysaccharide Lyase	AT1G11920	67.273	0.0	553

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal14g1987	K01728		-	gmx:100807483	645.58

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