Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1987 ATGATGTCGATTTTGTTACCTCAAACTCACAACGTAACCAATATGGTCCCTTCAACACAACTCCTCTTGCTATCATGCTTCTTATTACAATTTGCATCAACCTTTGTTAACTCCTCCTATTCAACACAAAATTACTACTATGTCCCAGAGAGTCCTAAGAAAGCATTGCTCAATGAGATAGATTCTTGTTGGAAGGCAAAATCAAATTGGGCATCAAATCGGCAAGCCTTGGCTGATTGTGCAATTGGATTTGGCAAATATGCAATTGGAGGAAAATATGGTGCAATATATAGAGTCACAGATTCCTCTGATGACCCTATAAACCCAAAACCAGGGACACTTCGTTATGGTGTAATCCAAACACAACCCCTTTGGATAACATTCAGCAAGGACATGGTTATTACATTAGAAAATGAGCTTATAATGAACAGTTATAAGACCATTGATGGGAGAGGAGTTAAAGTGGAGATTTCAAATGGGCCATGCATTACAATACAATATGTTAGTTATGTTATAATACATGGTATTAGCATCCATGATTGTAAACCAGGCAAGAGTGGCCTTGTTAGAAGTACTCCTGAGCATGTTGGTCATCGTCACGGCTCTGATGGAGATGCAATTAGTATATTTTCTTCCTCAAATGTTTGGATTGATCATTGCTATTTTGCTAGTTGCACTGATGGCCTCATTGATATTATTCATGCCTCAACTGCCATTACCATTTCTAACAATTACTTCACCAACCATGACAAAGTTATGCTGCTAGGACACAACGACCAATACACAGCAGATAAAATAATGAAAGTAACAATAGTCTTCAACCATTTTGCTACTGGGCTAATTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCGCATGTGGTGAACAACAAATATGATGAGTGGAAAATGTATGCTATGGGGGGAAGTGCTAACCCAACCATCTTCAGTGAAAGCAACTTCTTTATAGCATCCAATAACCAATTTGCAAAACAGGTTACAAAGAGGGAAGCGAAGAAGAAGTGGAAGAGTTGGAAATGGAGATCATCAAAGGATATATTCCAAAATGGTGCTTATTTTGTACCATCAGGCTATGGAAGTTGTGCACCTAATTACTCACGTGCTCAATCTTTTACTGCTGCACCAGCCTTCACGGTCCCAGCAATCACTCTCAATGCGGGTCCTTTGACTTGTGTTGTTGGTAGAGCATGTTAA 1215 0.3918 MMSILLPQTHNVTNMVPSTQLLLLSCFLLQFASTFVNSSYSTQNYYYVPESPKKALLNEIDSCWKAKSNWASNRQALADCAIGFGKYAIGGKYGAIYRVTDSSDDPINPKPGTLRYGVIQTQPLWITFSKDMVITLENELIMNSYKTIDGRGVKVEISNGPCITIQYVSYVIIHGISIHDCKPGKSGLVRSTPEHVGHRHGSDGDAISIFSSSNVWIDHCYFASCTDGLIDIIHASTAITISNNYFTNHDKVMLLGHNDQYTADKIMKVTIVFNHFATGLIERMPRVRFGYAHVVNNKYDEWKMYAMGGSANPTIFSESNFFIASNNQFAKQVTKREAKKKWKSWKWRSSKDIFQNGAYFVPSGYGSCAPNYSRAQSFTAAPAFTVPAITLNAGPLTCVVGRAC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1987 404 Gene3D - 57 397 IPR012334 -
Lal14g1987 404 PANTHER PECTATE LYASE 15 403 - -
Lal14g1987 404 SUPERFAMILY Pectin lyase-like 58 395 IPR011050 -
Lal14g1987 404 Pfam Pectate lyase 142 322 IPR002022 -
Lal14g1987 404 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Lal14g1987 404 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Lal14g1987 404 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Lal14g1987 404 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Lal14g1987 404 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Lal14g1987 404 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Lal14g1987 404 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Lal14g1987 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Lal14g1987 404 SMART amb_all 131 328 IPR002022 -
Lal14g1987 404 PANTHER PECTATE LYASE 18-RELATED 15 403 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1987 Lal-Chr14 18851293 18859687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1987 21 404 Polysaccharide Lyase AT1G11920 67.273 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1987 K01728 - gmx:100807483 645.58