Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1975 ATGCAGCAGGGTGGATATGGAGGAGGAGGAGGAGGTATGCTTCCACAGCAACAGCAACAGCAACAGCAACAGCAACCGTACATGACGGTGCCACCTCAGCAACCTACCAGCGCCGATGAGGTCCGTACCCTCTGGATCGGCGATCTCCAATACTGGATGGATGAGAATTATCTCTATACCTGTTTCGCTCACACCGGCGAGGTTGCTTCAGTGAAAGTCATTAGAAATAAGCAAACTAGTCAGTCAGAAGGTTATGGATTTATTGAGTTTACCAGTCGCGGCGGTGCAGAGAGAGTACTTCAATCATATAATGGTACCATTATGCCAAATGGTGGACAGAATTTCAGGATGAATTGGGCAACTTTTAGTGCCGGTGAGAGACGTCATGATGATTCTCCTGATTACTCCATTTTTGTTGGAGACTTGGCTGCAGATGTTACTGATTACCTTCTTCAGGAGACGTTTAGGACTCGTTATTCCTCAGTTAAAGGAGCCAAAGTTGTTATTGATAGGCTCACCGGGCGGACAAAGGGTTACGGTTTCGTGAAGTTTTCAGATGAAAGTGAACAAATTAGGGCTATGACTGAAATGCAAGGGGTTCTTTGCTCTACAAGGCCCATGCGGGTTGGACCAGCATCTAATAAGAACCCTACCACTCAACCTAAAGGGGGTCAAGAGGCTTTGTCATCTTGGAGCCTGTCACCAATTTCAGCTGAAATGGTTACCCTTTTAGTGCGTGGCCTTGCATTGATTTTTGTTGGCAATCTTGATCCTAATGTCACGGACGATCATCTGAGACAAGTTTTCGGGCAGTATGGAGAGTTAGTTCATGTGAAGATTCCATCAGCCAAGAGATGTGGGTTTGTCCAATTTGCAGACAGGAGCTGTGCAGAAGGGGCACTGCAAGCTTTAAATGGAACCCTTTTAGGTGGACAAAATGTTCGGCTTTCGTGGGGCCGAAGTCCTTCAAACAAACAGACTCAAACAGATCCAAACCAGTGGAATGGTGGTGGAGGATATTATGGATATGGTCAGGGTTATGAAAATTATGGTTATGCTCCTCCTCCTCCTGCTGGACAGGACCCCAACATGTATGGCAGTTATCCTGCGGGATATGCAAATTACCAACCTCCCCAGCAACAGCAGCAAATGGGATATAGTTAA 1164 0.4648 MQQGGYGGGGGGMLPQQQQQQQQQQPYMTVPPQQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRGGAERVLQSYNGTIMPNGGQNFRMNWATFSAGERRHDDSPDYSIFVGDLAADVTDYLLQETFRTRYSSVKGAKVVIDRLTGRTKGYGFVKFSDESEQIRAMTEMQGVLCSTRPMRVGPASNKNPTTQPKGGQEALSSWSLSPISAEMVTLLVRGLALIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPSAKRCGFVQFADRSCAEGALQALNGTLLGGQNVRLSWGRSPSNKQTQTDPNQWNGGGGYYGYGQGYENYGYAPPPPAGQDPNMYGSYPAGYANYQPPQQQQQMGYS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1975 387 SMART rrm1_1 136 210 IPR000504 GO:0003723
Lal14g1975 387 SMART rrm1_1 43 118 IPR000504 GO:0003723
Lal14g1975 387 SMART rrm1_1 250 317 IPR000504 GO:0003723
Lal14g1975 387 CDD RRM1_SECp43_like 43 123 - -
Lal14g1975 387 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 19 384 - -
Lal14g1975 387 MobiDBLite consensus disorder prediction 205 226 - -
Lal14g1975 387 SUPERFAMILY RNA-binding domain, RBD 121 225 IPR035979 GO:0003676
Lal14g1975 387 CDD RRM3_NGR1_NAM8_like 251 319 - -
Lal14g1975 387 MobiDBLite consensus disorder prediction 351 387 - -
Lal14g1975 387 MobiDBLite consensus disorder prediction 317 337 - -
Lal14g1975 387 MobiDBLite consensus disorder prediction 317 335 - -
Lal14g1975 387 MobiDBLite consensus disorder prediction 13 36 - -
Lal14g1975 387 Gene3D - 249 353 IPR012677 -
Lal14g1975 387 Gene3D - 13 125 IPR012677 -
Lal14g1975 387 Gene3D - 126 228 IPR012677 -
Lal14g1975 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 321 IPR000504 GO:0003723
Lal14g1975 387 SUPERFAMILY RNA-binding domain, RBD 17 120 IPR035979 GO:0003676
Lal14g1975 387 MobiDBLite consensus disorder prediction 1 36 - -
Lal14g1975 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 122 IPR000504 GO:0003723
Lal14g1975 387 MobiDBLite consensus disorder prediction 373 387 - -
Lal14g1975 387 MobiDBLite consensus disorder prediction 209 226 - -
Lal14g1975 387 CDD RRM2_SECp43_like 134 213 - -
Lal14g1975 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 109 IPR000504 GO:0003723
Lal14g1975 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 314 IPR000504 GO:0003723
Lal14g1975 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 200 IPR000504 GO:0003723
Lal14g1975 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 214 IPR000504 GO:0003723
Lal14g1975 387 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 384 - -
Lal14g1975 387 SUPERFAMILY RNA-binding domain, RBD 249 347 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1975 Lal-Chr14 18796734 18800004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1975 43 328 Eukaryotic Initiation Factors Gene Family AT4G34110 26.460 8.75e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1975 - - gmx:100796848 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1975 14 18796734 18800004 Lal5g1445 5 17005679 17009964 PCT
Lal14g1975 14 18796734 18800004 Lal3g0288 3 1885397 1889699 PCT
Lal14g1975 14 18796734 18800004 Lal11g0446 11 3382231 3386385 PCT