Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1953 ATGGCAAGGCACCGAAGCCGTAGCAGAAGCTACAGCCCTCGCCGCCGCAGCCGATCCCCGCCGCGCGGACGCAAACGTTACGATGATGATCGCGGTGACAGGCGTTCTTACCGTGATCGTCGCTCCCCACTTCCTTCTGGTTTGCTTGTTCGTAACCTCCCCCTTGATGCTAGACCCGAAGATCTTAGGGGCCCGTTCGAGCGCTTTGGTCCTGTCAAAGATGTTTATCTTCCTAAAAATTACTATACTGGTGAGCCTCGTGGCTTTGGGTTTGTGAAATATCGACATGGCGAAGATGCAGCCGAGGCCAAGCAACAGCTTAATCATACTATCATTGGTGGACGTGAAATCAGAATTGTCTTCGCTGAAGAAAATCGGAAAACTCCTCAAGAAATGCGTGTTACTACTCGCGGAAGTGCTCGACATGGAAGTGGTAGAAGGAGGCCTCGTTCAAGATCCAGAACCCCTAGACGCCGTTATCATTCCTCCTCTCGCTCCCCATCTCCAGCTAGGGATGATTCAAGGGATGGCAGGGGTAGGGATGATTATAATTCTTCTAAGAGATCAAGGTCTTATTCTAGGTCTCAATCTCCTATTGGTGGGAGGAACTCTAGGAGGTCCTCACATCTCAGGGAGAATGACCCGAGTCCTAGTGACAAGAGAGATCGTTCACCTAGCAGATCAAGGTCTTATTCTAGATCTCCCTCTCCAAGTGGTGAGAAGGAATATAGAAGGTCCCCTCGTCTCAGAGAGATTGGTGGGAGTCCTAATGACGAGAGGGAGCGCGCACCCACCAGATCACCAAGTCCTAGGGGTAATGGTCACGGTCCTTCAAGGTCTCGGTCTTGTTCATACAGCCCACGCTGA 867 0.5144 MARHRSRSRSYSPRRRSRSPPRGRKRYDDDRGDRRSYRDRRSPLPSGLLVRNLPLDARPEDLRGPFERFGPVKDVYLPKNYYTGEPRGFGFVKYRHGEDAAEAKQQLNHTIIGGREIRIVFAEENRKTPQEMRVTTRGSARHGSGRRRPRSRSRTPRRRYHSSSRSPSPARDDSRDGRGRDDYNSSKRSRSYSRSQSPIGGRNSRRSSHLRENDPSPSDKRDRSPSRSRSYSRSPSPSGEKEYRRSPRLREIGGSPNDERERAPTRSPSPRGNGHGPSRSRSCSYSPR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1953 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 118 IPR000504 GO:0003723
Lal14g1953 288 MobiDBLite consensus disorder prediction 140 161 - -
Lal14g1953 288 MobiDBLite consensus disorder prediction 271 288 - -
Lal14g1953 288 MobiDBLite consensus disorder prediction 1 48 - -
Lal14g1953 288 MobiDBLite consensus disorder prediction 205 228 - -
Lal14g1953 288 SMART rrm2_1 47 120 IPR003954 GO:0003676
Lal14g1953 288 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 216 - -
Lal14g1953 288 SUPERFAMILY RNA-binding domain, RBD 48 153 IPR035979 GO:0003676
Lal14g1953 288 MobiDBLite consensus disorder prediction 238 266 - -
Lal14g1953 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
Lal14g1953 288 MobiDBLite consensus disorder prediction 189 204 - -
Lal14g1953 288 SMART rrm1_1 47 120 IPR000504 GO:0003723
Lal14g1953 288 MobiDBLite consensus disorder prediction 165 188 - -
Lal14g1953 288 MobiDBLite consensus disorder prediction 1 21 - -
Lal14g1953 288 Gene3D - 1 137 IPR012677 -
Lal14g1953 288 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 216 - -
Lal14g1953 288 MobiDBLite consensus disorder prediction 22 41 - -
Lal14g1953 288 MobiDBLite consensus disorder prediction 123 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1953 Lal-Chr14 18673509 18677602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1953 50 108 Eukaryotic Initiation Factors Gene Family AT3G11400 45.763 2.68e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1953 K12900 - gmx:100788749 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1953 14 18673509 18677602 Lal7g1446 7 19323475 19326631 LSH