Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1948 ATGTCATCATTGAAAGGAGCATATGAACCAAACCAAGCTGAAATTTGCTTATCACTTCTTCAAAGAAACACTACATGTCCTTCTGGTGAGAGAAGAGGGAGAAGAAAGCAAGCAGAAGCAGGAAGGTTTCTTGGTGTGAGGAGGCGCCCTTGGGGTAGATATGCTGCTGAAATTAGAGACCCTACAACAAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTCATGAAGCTGCTCTTGCTTATGATAGAGCTGCTCTCTCTATGAAAGGAAACCAAGCAAGAACCAACTTTGTTTACTCTCACAATATCAATTTTCACACTCTTGTTACTTCTCCAATGGATGTTCAAGAAGTTCAACCTCTCTTGCCAGCTTCACAGGTTCTAGGTACTTACACTCAGATTAAACAACCAACCAATCAAATCACAATGTCTCAGCACACTGAAAATCCCTCATTGAACGTTGAAAATATGTGTGTTGTTGAAACTGCAAATGGTTCATCAGCTCAGGCTGATAATTTCTTCTTTTCAAATGATTGTAGCTCTGGCTATTTGGAATGCATTGTTCCTGATAATTGTTATAGACCTGGTTCCAGTACCAACAGTTCATACTCAAGAAAGAGCATTTCTAGTGCTCAAAGTGATGATGATCAAAAGGTGAGCTCATTTAACAATACAAACTCCATTGAGAGTAATTTACTTGTTGATCACATGGCAAATTCATTCTCTCCTCAAGAAGCCTCTTATAACATGTCAGAATTTTCTTATCCGAGTGAAGGATTATGGGATTGGAATTCAAATGAACTTTCAGCTATATTTAACTGCAACAACAATAGCAATGGATTAAAATTGTATAATGAGTATGAGTATCCCATTAGTGAGACTAGTAGTCAAAGCTATGGGCTAATGAATGAAGCTGCTTCTTCAACTATCTGTTTTCCACCCTTTGGGGACGTAGACTTGGGATACCACCCACTCTTATGA 984 0.3882 MSSLKGAYEPNQAEICLSLLQRNTTCPSGERRGRRKQAEAGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAYDRAALSMKGNQARTNFVYSHNINFHTLVTSPMDVQEVQPLLPASQVLGTYTQIKQPTNQITMSQHTENPSLNVENMCVVETANGSSAQADNFFFSNDCSSGYLECIVPDNCYRPGSSTNSSYSRKSISSAQSDDDQKVSSFNNTNSIESNLLVDHMANSFSPQEASYNMSEFSYPSEGLWDWNSNELSAIFNCNNNSNGLKLYNEYEYPISETSSQSYGLMNEAASSTICFPPFGDVDLGYHPLL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1948 327 MobiDBLite consensus disorder prediction 200 223 - -
Lal14g1948 327 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Lal14g1948 327 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Lal14g1948 327 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 324 - -
Lal14g1948 327 Pfam AP2 domain 45 91 IPR001471 GO:0003700|GO:0006355
Lal14g1948 327 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Lal14g1948 327 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Lal14g1948 327 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Lal14g1948 327 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 324 - -
Lal14g1948 327 CDD AP2 42 98 IPR001471 GO:0003700|GO:0006355
Lal14g1948 327 SUPERFAMILY DNA-binding domain 43 100 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1948 Lal-Chr14 18655267 18656250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1948 8 196 AP2-EREBP Transcription Factor Family AT5G18560 48.117 1.53e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal14g1948 AP2 2.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1948 - - lang:109362072 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1948 14 18655267 18656250 Lal7g1430 7 19230066 19231106 LSH
Lal14g1948 14 18655267 18656250 Lal5g1389 5 16552485 16553432 PCT
Lal14g1948 14 18655267 18656250 Lal3g0344 3 2265848 2266792 PCT
Lal5g1389 5 16552485 16553432 Lal14g1948 14 18655267 18656250 PCT
Lal3g0344 3 2265848 2266792 Lal14g1948 14 18655267 18656250 PCT