Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1947 ATGGAACGTTACGGAGGCGGCAGTGAAGGGTCACAGTCTGATCCGTCGCCGGAATGGGGCTACCAAGAGTCATCATGGGAAGGTGGAATTGGTGGTGCTGAATCATACCCTCACCGACCTGATGAAGCTGATTGTATCTACTTTCTCAAGAACGGTTTTTGTGGCTATGGCTCTCGATGCCGCTTCAATCATCCTCGTCACAGTGCTGGAATAATTACTGGACCTGCAAAGACTGGAGTAGGGGAGCATCCAGAACGAGTAGGTCAGCCTGTGTGCCAGTATTATATGAGGACGGGATCATGCAAATTTGGCCCTTCCTGCAAATACCACCATCCCAGGCAGGGAGCAGGCATTGCTGCCCATGTCTCACTAAATTATTATGGATATCCATTGCGAGCGGGTGAGAAAGAGTGTTCTTATTATGTGAAAACGGGACAATGCAAGTTTGGAACAACTTGTAAATTCCATCATCCACAGCCTGCGGGTGTCCAGATTCCGGCGCCATCACCAGTCCCCCCAGTTTCACCTCTGGCTGTGCCTGTACCTTCACCATTATATTCAACTGTACAGTCTCCATCTGGTCCTTCATCACAGCAATATGGTGTACTGGTTGCAAGGCCACCTTTGCTACCCGGGTCATTAGTTCAGGGGCCCTATGGGCCGATGGTAGTGTCCCCTACCATGGTCCCCTTTTCTGGCTGGGGTCCTTATCAGGGTCCTGCAACAAGCCCAGTATTTCCTTCAAGTACTGCGTCTAATGTTGGTTCAACCCAGCTTTATGGGATAACACAGTTCCCTTCACCAGCAACTGCCTATGCTGGACCTTATCAACCTTCTGGTTCCTTACTTGGTCCTTCTGGCAGTGGTCAGAAGGAGCACTCATTGCCAGAAAGGCCCAATCAACCAGAATGTCAGTATTACATGAAAACTGGGGAATGCAAATTTGGTCCATCATGTAGATATCATCATCCAGCACACACAAGTGCTTCAAAAACAAATGTGATCATTAGTCCTGTGGGTCTTCCTTTGCGCCCGGGGGCATCCGTTTGCACTCATTATACCCAACGTGGAGTTTGTAAGTTTGGTCCTGCATGCAAATTTGATCATCCTATGGGATCACTGCGTTATAGTCCTTCTGCTTCTTCCCTGACTGACATGCCTGTTGCACCCTATTATTCTGTGGGTTCCTCGCATGGTACTCTTGCCCCGTCATCTTCATCATCAGAGTTGCAGCATGAACTTGCCTCAGGATCCAGCAACGAGCCTGCTTCATCCAGAATGTCTTCATCAACGAGCACACTAACTGGATCAGTTGGCTTGACCTTGTCAAGTGGTGGACCAATTTCTCAATCAGGCACCCAACCATCTATTCAGAGTTCCAGTTCTTTAGCAACTGCCAATGCCACCATGAGTAGCACTGTCTCTTACACCTAA 1434 0.4888 MERYGGGSEGSQSDPSPEWGYQESSWEGGIGGAESYPHRPDEADCIYFLKNGFCGYGSRCRFNHPRHSAGIITGPAKTGVGEHPERVGQPVCQYYMRTGSCKFGPSCKYHHPRQGAGIAAHVSLNYYGYPLRAGEKECSYYVKTGQCKFGTTCKFHHPQPAGVQIPAPSPVPPVSPLAVPVPSPLYSTVQSPSGPSSQQYGVLVARPPLLPGSLVQGPYGPMVVSPTMVPFSGWGPYQGPATSPVFPSSTASNVGSTQLYGITQFPSPATAYAGPYQPSGSLLGPSGSGQKEHSLPERPNQPECQYYMKTGECKFGPSCRYHHPAHTSASKTNVIISPVGLPLRPGASVCTHYTQRGVCKFGPACKFDHPMGSLRYSPSASSLTDMPVAPYYSVGSSHGTLAPSSSSSELQHELASGSSNEPASSRMSSSTSTLTGSVGLTLSSGGPISQSGTQPSIQSSSSLATANATMSSTVSYT 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1947 477 MobiDBLite consensus disorder prediction 276 301 - -
Lal14g1947 477 ProSiteProfiles Zinc finger C3H1-type profile. 39 67 IPR000571 GO:0046872
Lal14g1947 477 SUPERFAMILY CCCH zinc finger 347 375 IPR036855 GO:0046872
Lal14g1947 477 MobiDBLite consensus disorder prediction 400 477 - -
Lal14g1947 477 ProSiteProfiles Zinc finger C3H1-type profile. 86 114 IPR000571 GO:0046872
Lal14g1947 477 ProSiteProfiles Zinc finger C3H1-type profile. 132 160 IPR000571 GO:0046872
Lal14g1947 477 Gene3D - 119 166 - -
Lal14g1947 477 SUPERFAMILY CCCH zinc finger 41 67 IPR036855 GO:0046872
Lal14g1947 477 MobiDBLite consensus disorder prediction 1 24 - -
Lal14g1947 477 SMART c3hfinal6 344 371 IPR000571 GO:0046872
Lal14g1947 477 SMART c3hfinal6 39 66 IPR000571 GO:0046872
Lal14g1947 477 SMART c3hfinal6 298 325 IPR000571 GO:0046872
Lal14g1947 477 SMART c3hfinal6 86 113 IPR000571 GO:0046872
Lal14g1947 477 SMART c3hfinal6 134 159 IPR000571 GO:0046872
Lal14g1947 477 SUPERFAMILY CCCH zinc finger 134 160 IPR036855 GO:0046872
Lal14g1947 477 ProSiteProfiles Zinc finger C3H1-type profile. 298 326 IPR000571 GO:0046872
Lal14g1947 477 Gene3D - 345 418 - -
Lal14g1947 477 Gene3D - 37 118 - -
Lal14g1947 477 Gene3D - 289 338 - -
Lal14g1947 477 SUPERFAMILY CCCH zinc finger 87 114 IPR036855 GO:0046872
Lal14g1947 477 ProSiteProfiles Zinc finger C3H1-type profile. 344 372 IPR000571 GO:0046872
Lal14g1947 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 348 371 IPR000571 GO:0046872
Lal14g1947 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 324 IPR000571 GO:0046872
Lal14g1947 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 113 IPR000571 GO:0046872
Lal14g1947 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 41 66 IPR000571 GO:0046872
Lal14g1947 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 159 IPR000571 GO:0046872
Lal14g1947 477 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 468 - -
Lal14g1947 477 SUPERFAMILY CCCH zinc finger 301 326 IPR036855 GO:0046872
Lal14g1947 477 PANTHER PROTEIN PHOSPHATASE RELATED 1 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1947 Lal-Chr14 18650193 18654488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1947 1 441 C2H2 Transcription Factor Family AT5G18550 54.978 3.55e-144 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal14g1947 zf-CCCH 4.9e-07 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1947 14 18650193 18654488 Lal14g1947 14 18650193 18654488 ECH
Lal14g1947 14 18650193 18654488 Lal7g1429 7 19224568 19228641 LSH
Lal14g1947 14 18650193 18654488 Lal19g1503 19 17401376 17406689 LSH
Lal14g1947 14 18650193 18654488 Lal5g1388 5 16542064 16551452 PCT
Lal14g1947 14 18650193 18654488 Lal3g0346 3 2269292 2279740 PCT
Lal14g1947 14 18650193 18654488 Lal11g0493 11 3851814 3862454 PCT
Lal5g1388 5 16542064 16551452 Lal14g1947 14 18650193 18654488 PCT
Lal3g0346 3 2269292 2279740 Lal14g1947 14 18650193 18654488 PCT
Lal11g0493 11 3851814 3862454 Lal14g1947 14 18650193 18654488 PCT