Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1945 ATGTTGAGTGGGAGCATGGATTCTGCGAGGGATGATGTTGTTGCTGCAGGGACAGTGCTTATTCCAATGCGATTTGTGTGGCCATATGGGGGAAGAAGTGTCTATCTCAGTGGTTCTTTTACACGGTGGTCTGAGCTTATACAAATGTCTCCGGTTGAAGGTGGCCCATCTGTGTTTCAAGTAATTCATAGTTTAGCTCCTGGTTATCACCAGTACAAGTTTTATGTTGATGGAGAATGGCGACATGATGAGCATCAACCTTATATGTCAGGAGAATTTGGAATAGTTAACACTGTTTTATTAGCTACTGATCCTAATTTTATACCCATTTTACCTCCGGACATAGCTTCTGGATCTAACATGGATGTGGACAATGAGGCTTTTCGCCGTGTGGTCCGGTTGACAGATGTTTCACTGAGTGATGTGTTGCCAAGAATATCAGATGTTGATTTACAAATGTCCCGTCAGCGTATTTCTGCATTCCTGTCTATGCGCACAGCTTATGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCCTTAGATGTTGATATGCCAGTCAAGCAGGCATTTCACATTCTACATGAGCAGGGAATTCCCATGGCTCCTCTTTGGGACTTCTGTAAGGGGCAGTTTGTTGGAGTTCTCAGTGCTTTGGATTTTATTTTAATTTTAAGAGAGATCGGGAATCACGGGTCCAATCTGACAGAAGAGGAGCTTGAAACGCATACCGTATCGGCTTGGAAAGAAGGAAAGTTTTACTTAAATAGACAAAACAATGGACACAGAACAGCATTTTCAAGGCCTTTTATTCATGCTGGGCCATATGAAAATTTGAAAGATGTTGCTATGAAAATCCTTCAAAATGAGGTTTCAACAGTCCCTATTGTCCATTCATCTTCTGAAGATGGTTCATTTCCACAGCTACTACATCTTGCTTCACTTTCAGGAATACTTAAATGCATTTGCAGGTATTTCAGGCATTGCTCTAGTTCGTTGCCTATACTTCAACTTCCAATTTCTGCAATTCCTGTTGGCACATGGGTGCCCAAAATTGGGGAGTCAAATTGTCGACCTTTAGCAATGTTGAGACCAAATGCTCCGCTTGCTTCAGCCCTAAACTTATTAGTTCAGGCTCAAGTGAGTTCAATACCAATAGTTGATGATACTGACACATTACTGGATATATACTGTCGGAGTGATATAACCTCTTTGGCAAAGGACAAAGCTTATACACACATTAATCTTGATGGGATGACTGTTAATCAGGCATTGCAGTTGGGCCAGGATTCTTATGATCCTTATGAGCTGAGAAGTCAAAGATGTCAGATGTGTTTGCGATCTGATTCTCTCCATAAAGTGATGGAACGTTTGGCAAATCCAGGTGTGAGGCGGATTGTAATTGTGGAAGCTGGCAGCAAGCGTGTAGAAGGCATCATTTCACTGAGAGACATATTTAAGTTCTTCCTTGCTTGA 1473 0.4189 MLSGSMDSARDDVVAAGTVLIPMRFVWPYGGRSVYLSGSFTRWSELIQMSPVEGGPSVFQVIHSLAPGYHQYKFYVDGEWRHDEHQPYMSGEFGIVNTVLLATDPNFIPILPPDIASGSNMDVDNEAFRRVVRLTDVSLSDVLPRISDVDLQMSRQRISAFLSMRTAYELLPESGKVVALDVDMPVKQAFHILHEQGIPMAPLWDFCKGQFVGVLSALDFILILREIGNHGSNLTEEELETHTVSAWKEGKFYLNRQNNGHRTAFSRPFIHAGPYENLKDVAMKILQNEVSTVPIVHSSSEDGSFPQLLHLASLSGILKCICRYFRHCSSSLPILQLPISAIPVGTWVPKIGESNCRPLAMLRPNAPLASALNLLVQAQVSSIPIVDDTDTLLDIYCRSDITSLAKDKAYTHINLDGMTVNQALQLGQDSYDPYELRSQRCQMCLRSDSLHKVMERLANPGVRRIVIVEAGSKRVEGIISLRDIFKFFLA 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1945 490 Gene3D Immunoglobulins 18 101 IPR013783 -
Lal14g1945 490 CDD E_set_AMPKbeta_like_N 22 100 - -
Lal14g1945 490 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 489 - -
Lal14g1945 490 Gene3D - 148 331 IPR046342 -
Lal14g1945 490 ProSiteProfiles CBS domain profile. 436 490 IPR000644 -
Lal14g1945 490 SUPERFAMILY E set domains 21 102 IPR014756 -
Lal14g1945 490 SMART cbs_1 176 225 IPR000644 -
Lal14g1945 490 SMART cbs_1 440 489 IPR000644 -
Lal14g1945 490 SMART cbs_1 358 406 IPR000644 -
Lal14g1945 490 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 489 - -
Lal14g1945 490 Pfam Glycogen recognition site of AMP-activated protein kinase 21 103 IPR032640 -
Lal14g1945 490 Pfam CBS domain 443 488 IPR000644 -
Lal14g1945 490 Pfam CBS domain 357 404 IPR000644 -
Lal14g1945 490 SUPERFAMILY CBS-domain pair 356 489 IPR046342 -
Lal14g1945 490 ProSiteProfiles CBS domain profile. 170 232 IPR000644 -
Lal14g1945 490 Gene3D - 337 490 IPR046342 -
Lal14g1945 490 SUPERFAMILY CBS-domain pair 157 327 IPR046342 -
Lal14g1945 490 ProSiteProfiles CBS domain profile. 355 411 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1945 Lal-Chr14 18618184 18625691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1945 11 104 Protein tyrosine phosphatase (PTP) family AT3G01510 33.333 6.65e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1945 - - gmx:100785692 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1945 14 18618184 18625691 Lal14g1945 14 18618184 18625691 ECH