Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1919 ATGTCTAGCAGAAGGTCAAGATCTAGGCAATCAAGTGGTTCAAGTAATATCAGCGAGGAACAGATCAATGACCTTGTCTCCAAGTTACAACAGCTTCTTCCTGAGATTCGCAATTGCCAAAGGCGCTCTGATAAGGTGTCATCTGCGAAGATATTGCAAGAGACATGCAACTATATTAGAAGCTTACACAGAGAGGTGGACGATCTAAGTGAGCGTTTGTCTGAGTTGTTGGCAACAACTGATACTGCCCAAGCTGCAATCATTAGAAATCTACTTCTGCAATAA 285 0.4246 MSSRRSRSRQSSGSSNISEEQINDLVSKLQQLLPEIRNCQRRSDKVSSAKILQETCNYIRSLHREVDDLSERLSELLATTDTAQAAIIRNLLLQ 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1919 94 Coils Coil 59 79 - -
Lal14g1919 94 PANTHER TRANSCRIPTION FACTOR PRE3 1 92 - -
Lal14g1919 94 Gene3D - 19 90 IPR036638 GO:0046983
Lal14g1919 94 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 62 IPR011598 GO:0046983
Lal14g1919 94 Pfam Helix-loop-helix DNA-binding domain 21 63 IPR011598 GO:0046983
Lal14g1919 94 SMART finulus 16 68 IPR011598 GO:0046983
Lal14g1919 94 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Lal14g1919 94 CDD bHLH_AtPRE_like 17 79 - -
Lal14g1919 94 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 80 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1919 Lal-Chr14 18474373 18475557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1919 17 94 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 78.205 3.69e-38 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal14g1919 HLH 4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1919 - - twl:119981517 137.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1447 12 17711612 17713767 Lal14g1919 14 18474373 18475557 ECH
Lal24g1387 24 15272036 15273985 Lal14g1919 14 18474373 18475557 ECH
Lal6g0855 6 5793642 5795462 Lal14g1919 14 18474373 18475557 ECH
Lal22g0769 22 5526317 5529125 Lal14g1919 14 18474373 18475557 ECH
Lal14g1919 14 18474373 18475557 Lal14g1919 14 18474373 18475557 ECH