Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1909 ATGGGAAGACCCCCAAACTATGAAAAAATTGGAATTAAGAAAGGACCTTGGACTCCAGAAGAGGATATCTTGTTGGTCTCTTACATTCAAGAACATGGTCCTGGTAATTGGAGATCTGTTCCAACCAATACAGGTTTGATGAGATGCAGTAAAAGCTGCAGACTTAGATGGACAAATTATCTTCGACCAGGTATCAAACGAGGTAACTTCACTGATCATGAGGAGAAGATGATAATCCACCTCCAAGCTCTTTTGGGCAACAGATGGGCTGCTATAGCTTCCTATCTTCCACAGAGGACAGACAATGACATAAAAAATTACTGGAATACTCATTTGAGGAAGAATCACAACAAGCTTCAAAATGGAGGAAATGATCATAATCAAGAAGGGCATTCTTCTTCTTCTTCTTCTGCACAAGAACAGTCAAAGGGTCAATGGGAGAGAAGGCTACAAACTGATATTCAAATGGCCAAACAAGCCTTATCTGAGGCTTTGTCCTTTCATAAACCAACAACCAATACTTTCCCTGAAACCAAACCCTTAACTTTTCATATTCACACTACTACTACTTCAACCTACCCCACAAATCAACCAAACAATGCACCTTCCTATGCATCAAGCTATGAAAACATATCTAAATTGCTAAAAAACTGGATGATGAAATCACCAAACACACCAAATTCCTTCAGCAACAACATGGTCACCACAGGGTCATGTTCCAGCGAAGGAGGAAATAGCACTACTGATCAATGTACACAAGATCATGCTTTTGACTCCTTATTGAGCTTCAACTCCTCCAAATTTGTTGTTGAAGAGATTAAAAACACCTTGACAACTAATAAGACGGGCGTGTTCCAAGATCTAAGGAAGACAAACATGGAGACTCAACAAGTGCCTTTTACTTTGCTAGAGAATTGGCTTTTTGATGATGGAGCTGTTCAATGCCATGATGATCTGATGAACATGTCACTCGAAGAAAGTACTTTAGGTTTGTTCTAG 999 0.3964 MGRPPNYEKIGIKKGPWTPEEDILLVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLRKNHNKLQNGGNDHNQEGHSSSSSSAQEQSKGQWERRLQTDIQMAKQALSEALSFHKPTTNTFPETKPLTFHIHTTTTSTYPTNQPNNAPSYASSYENISKLLKNWMMKSPNTPNSFSNNMVTTGSCSSEGGNSTTDQCTQDHAFDSLLSFNSSKFVVEEIKNTLTTNKTGVFQDLRKTNMETQQVPFTLLENWLFDDGAVQCHDDLMNMSLEESTLGLF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1909 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal14g1909 332 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lal14g1909 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal14g1909 332 CDD SANT 69 112 IPR001005 -
Lal14g1909 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 318 - -
Lal14g1909 332 CDD SANT 16 61 IPR001005 -
Lal14g1909 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lal14g1909 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal14g1909 332 MobiDBLite consensus disorder prediction 115 148 - -
Lal14g1909 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lal14g1909 332 SMART sant 13 63 IPR001005 -
Lal14g1909 332 SMART sant 66 114 IPR001005 -
Lal14g1909 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal14g1909 332 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 318 - -
Lal14g1909 332 Gene3D - 13 66 - -
Lal14g1909 332 Gene3D - 69 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1909 Lal-Chr14 18426580 18428295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1909 1 324 MYB Transcription Factor Family AT5G62470 50.546 3.16e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal14g1909 Myb_DNA-binding 5.3e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1909 14 18426580 18428295 Lal14g1909 14 18426580 18428295 ECH
Lal14g1909 14 18426580 18428295 Lal7g1394 7 18924460 18926225 LSH
Lal14g1909 14 18426580 18428295 Lal19g1477 19 17249301 17250804 LSH