Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1903 ATGGGAAGAGTTAAACTAAAGATAAAGAAATTAGAGAGCACAAGCAACAGGCAAGTTACTTATTCCAAACGCAAAAGTGGAATTTTAAAGAAAGCTAAAGAATTATCAATACTATGTGATATACCTATTGCACTTCTCATGTTTTCACCAACTGGAAAACCTACATTGCTACAAGGAGAGCGCAGCAATCTTGAGGAGGTCATTACAAAGTTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAGCTGGAAAGCCTTGAAGTTCTGAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTTCTGGGTTCAGGCAATCAAACAGTGGAGGTACAGCTTCTTTATAAGCATCAACATGGAATTAACTCATCAAGTGAGGGTTCTACAAACTCAGCTTGCAGAAGTGCATCAAAGACTGAGGTGCAACTTTGGAGCTTTTGGTTGTTAAACTATTGGAGTAATCTTGACAAGATCAATAATTTGGAACATCTTAGGCAAATGGAAGACTCGCTAAGGGAATCCATCAATCGAGTGTGTCTACAGAAGGAAAATTTAGGAAAGAACCAACTACTTCCACTTGGATGTTCTAACCAGTTACAGGAAGGGATGAATTTACCCATGATGATGGCTGGTCTGCAAGAGTCTCAACCCCTGTCTTGGCTTTTGAATAATGATAACCATCACCAATTGTTATTACCCAATGAACCAAAATTTCTAGCATTTAGTGATAATACGAATAGAGATGCTGAGTGCTCAACTGACATTTCACTCCCTGGCTATTCTGGTTATAACATTGGCAACAACAAACTTGAGGTTGGAAGCTCTCCCCAAGTCACTACTTTGGGTCATGGAGGTAGTGCCTTGAATGAGTTAAATGGAACTGCTTCCTTAAATGTACAACACTGTGAGCAGTTTGCATACCCTCCTCATCCACCAGATGATGTAGAAATGAAACATCACCAAGCAATGAACAGTAAACCAAACACCGCGGATTACCAAATTCATAACAACTTTGATTTGCCTAGATCACTCTTTGAAAATGGACATCAGTTCTGGAATTCTGGCTCTGGGCCTTGTGGAATTGCTATGTATAATGAGAATGGCTTCCATAGAGTAAGGACTATGCAGCCCTTTCCTGTTTGA 1158 0.3964 MGRVKLKIKKLESTSNRQVTYSKRKSGILKKAKELSILCDIPIALLMFSPTGKPTLLQGERSNLEEVITKFAQLSPQERAKRKLESLEVLKKTFKKLDHDVKIQDFLGSGNQTVEVQLLYKHQHGINSSSEGSTNSACRSASKTEVQLWSFWLLNYWSNLDKINNLEHLRQMEDSLRESINRVCLQKENLGKNQLLPLGCSNQLQEGMNLPMMMAGLQESQPLSWLLNNDNHHQLLLPNEPKFLAFSDNTNRDAECSTDISLPGYSGYNIGNNKLEVGSSPQVTTLGHGGSALNELNGTASLNVQHCEQFAYPPHPPDDVEMKHHQAMNSKPNTADYQIHNNFDLPRSLFENGHQFWNSGSGPCGIAMYNENGFHRVRTMQPFPV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1903 385 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal14g1903 385 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal14g1903 385 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal14g1903 385 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Lal14g1903 385 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 377 - -
Lal14g1903 385 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Lal14g1903 385 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Lal14g1903 385 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 377 - -
Lal14g1903 385 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal14g1903 385 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1903 Lal-Chr14 18399410 18402351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1903 1 326 Type I MADS-box Gene Family AT2G03060 42.319 2.00e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal14g1903 SRF-TF 6.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1903 - - lang:109362237 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1903 14 18399410 18402351 Lal14g1903 14 18399410 18402351 ECH
Lal14g1903 14 18399410 18402351 Lal7g1383 7 18881466 18884703 LSH