Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1897 ATGTCGGACGAAGAACACCATTTTGAGTCGAAGGCAGATGCCGGAGCATCGAAGACTTACCCTCAGCAAGCTGGTACCATCCGTAAGAATGGTTATATAGTCATCAAGGGTCGTCCCTGCAAGGTTGTTGAAGTTTCAACCTCCAAGACCGGTAAGCACGGTCATGCTAAGTGTCACTTTGTTGCAATTGATATTTTCACTGCCAAGAAGCTTGAGGATATTGTTCCATCTTCTCACAATTGTGATGTTCCTCATGTGAATCGCACTGACTACCAGCTCATTGATATAGCCGAGGATGGATTTCTGAGTCTGCTTACTGATAATGGAAATACCAAGGATGACCTCAAGCTTCCCACCGATGAAGCTCTACTTGCTCAGATAAAGGATGGATTTGCTGAGGGAAAGGACCTTGTTGTTTCTGTTATGTCTGCTATGGGTGAGGAACAGATCTGTGCTCTGAAGGATATCGGGCCAAAGTAG 480 0.4542 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDIAEDGFLSLLTDNGNTKDDLKLPTDEALLAQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1897 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Lal14g1897 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Lal14g1897 159 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Lal14g1897 159 CDD S1_eIF5A 86 156 - -
Lal14g1897 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lal14g1897 159 Gene3D - 1 85 IPR014722 -
Lal14g1897 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lal14g1897 159 Gene3D - 86 158 IPR012340 -
Lal14g1897 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lal14g1897 159 MobiDBLite consensus disorder prediction 1 21 - -
Lal14g1897 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lal14g1897 159 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lal14g1897 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1897 Lal-Chr14 18377506 18378780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1897 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 89.937 6.20e-105 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1897 K03263 K02180 mnt:21396395 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1897 14 18377506 18378780 Lal14g1897 14 18377506 18378780 ECH
Lal14g1897 14 18377506 18378780 Lal7g1372 7 18811512 18812994 LSH
Lal14g1897 14 18377506 18378780 Lal19g1462 19 17170209 17171579 LSH