Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1891 ATGGAAGAAGTTCAAGAATTGATGAAACAACAACACGCGTGCAAGTTCTGCATCAAGAGCTTCCCTTGTGGCAGATCCTTAGGGGGTCACATGAGGTCTCATATCACAAATTTGTCATCATCAGCTGAAACTGAAGACAAAGAAAAAGTTGGTGGTTCTGAAGCTGGATTTGGAACAACGATTAACACTGGCTACGGTTTAAGGGAGAATCCAAAGAAGACTTGGAGGATTGCAGATTCAACAGGTGAAGAAACTTCGCTCACACTCACTATTGAAAGGTTCTGTAGAGAGTGTGGCAAAGGGTTTCACTCTTGGAAAGCCTTGTTTGGCCACATGAAATGTCACTCTGACAAACAAAAAGTTTCTAACAGCTTGGTGGAGGATCAAGATTCTGTCACTAACAACAACGCTAGCAGCAGCAACAATGATAAGATGGTCTTGTTGGATACCCAATCTGATAATGAAGCAGCTGCTCCAAGTAAGAGAAGAAGATCAAAGAGAAGAAGAACAAGGTATATGGTTGCTGCTAATACCAATCCTTCTTCTTCTTCTTCACTTTCTGAGGTTGAGCAAGAGCAAGAAGAAGTTGCTATGAGCTTGATCATGCTTAGTAAGGATTTGAGTCCTTGGAGTGGTATCAATTCACTTGCTGATTTCTCTGATAATAACTCTGCTTACTTCCAAACTTCATCTTCAGTTCAAACTAAATTTGAGAAAATGAAGAACACTGTACTGAATTGTTCTTCTGAGATTGCAAAAGTGATCAATCAAAGTGGGAAGAAGTTAGAGTTTGGGAGTTGTGTTTCTGGAAATCTCAACTCCAAAGGGAAAGGTTCTGAACCTTTGACTACTGAGTTTAAGAGTGAGAAAGCAAAGAAGTGTGAGCTTGATTATGTGCCTGCATTGGAGGACTGTGAAGTTTACAGAGTCAATGGAACAGAATCAGTTTTATCCAAGTCTACTATTTCTAACAAGTACAGGTCAATAAAGACAAAGTTTTTGGGTTCTGAATTGAAATCAAATTCTCATCAGAATTTGACAGACAAGCCTTCAGAAGCAGCTGAGTTCAGCAAGAACCCCCATAAAAGAGGCAAATTTGAGTGTACAACTTGCAACAAAATCTTCGATTCATACCAAGCACTTGGAGGTCATAGAGCTAGTCACAAGAGGAACAAAAGCTGCTTTGTTTCAAGGAATGAGAGAAGTGAAAACAGCATTGAAACTGAACTCTCTCCTGATCCAACAACTGAAAGCAAGGTCATGAAAAATAGTGTCAGGGAGTATCTGGTTGAAGCTGAAATGGATGCTGCTGGTTTTGAAAATGAAGTATCATACAGAGTTACTGAGTCTAAGAAAAGCAAAGTTCATGAATGTCCAATTTGCTTTAAGGTTTTTCAATCTGGACAAGCTTTGGGTGGTCACAAGAGATCTCATTTGGCTAGTGGGTCTGATAGTACAAAAAACTTTCAAAAGGTGGTACTTGAAGAACCAGTTCGAGAAATTAGAGAGTTCCTTGATCTCAATCTTCCTGCTGCTACAGAAGAGGAAAGTACTAGCTATGCTGATTCTAACAGACCATGGTAG 1584 0.3977 MEEVQELMKQQHACKFCIKSFPCGRSLGGHMRSHITNLSSSAETEDKEKVGGSEAGFGTTINTGYGLRENPKKTWRIADSTGEETSLTLTIERFCRECGKGFHSWKALFGHMKCHSDKQKVSNSLVEDQDSVTNNNASSSNNDKMVLLDTQSDNEAAAPSKRRRSKRRRTRYMVAANTNPSSSSSLSEVEQEQEEVAMSLIMLSKDLSPWSGINSLADFSDNNSAYFQTSSSVQTKFEKMKNTVLNCSSEIAKVINQSGKKLEFGSCVSGNLNSKGKGSEPLTTEFKSEKAKKCELDYVPALEDCEVYRVNGTESVLSKSTISNKYRSIKTKFLGSELKSNSHQNLTDKPSEAAEFSKNPHKRGKFECTTCNKIFDSYQALGGHRASHKRNKSCFVSRNERSENSIETELSPDPTTESKVMKNSVREYLVEAEMDAAGFENEVSYRVTESKKSKVHECPICFKVFQSGQALGGHKRSHLASGSDSTKNFQKVVLEEPVREIREFLDLNLPAATEEESTSYADSNRPW 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1891 527 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Lal14g1891 527 SUPERFAMILY beta-beta-alpha zinc fingers 11 115 IPR036236 -
Lal14g1891 527 MobiDBLite consensus disorder prediction 172 188 - -
Lal14g1891 527 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Lal14g1891 527 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 527 - -
Lal14g1891 527 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 527 - -
Lal14g1891 527 MobiDBLite consensus disorder prediction 340 359 - -
Lal14g1891 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Lal14g1891 527 SUPERFAMILY beta-beta-alpha zinc fingers 366 478 IPR036236 -
Lal14g1891 527 SMART c2h2final6 12 34 IPR013087 -
Lal14g1891 527 SMART c2h2final6 456 478 IPR013087 -
Lal14g1891 527 SMART c2h2final6 93 115 IPR013087 -
Lal14g1891 527 SMART c2h2final6 366 388 IPR013087 -
Lal14g1891 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 366 393 IPR013087 -
Lal14g1891 527 Pfam C2H2-type zinc finger 455 480 - -
Lal14g1891 527 Pfam C2H2-type zinc finger 12 34 - -
Lal14g1891 527 Pfam C2H2-type zinc finger 366 390 - -
Lal14g1891 527 Pfam C2H2-type zinc finger 95 117 - -
Lal14g1891 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 34 IPR013087 -
Lal14g1891 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 456 483 IPR013087 -
Lal14g1891 527 Gene3D Classic Zinc Finger 9 115 - -
Lal14g1891 527 Gene3D Classic Zinc Finger 363 478 - -
Lal14g1891 527 ProSitePatterns Zinc finger C2H2 type domain signature. 458 478 IPR013087 -
Lal14g1891 527 MobiDBLite consensus disorder prediction 148 188 - -
Lal14g1891 527 ProSitePatterns Zinc finger C2H2 type domain signature. 368 388 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1891 Lal-Chr14 18340351 18341934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1891 347 521 C2H2 Transcription Factor Family AT2G45120 41.573 1.20e-29 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal14g1891 zf-C2H2_6 1.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1891 - - lang:109344462 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1891 14 18340351 18341934 Lal7g1363 7 18760966 18762279 LSH
Lal14g1891 14 18340351 18341934 Lal19g1461 19 17167393 17168982 LSH