Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1878 ATGGGAAGAGGGAGGGTTGAACTGAAGAGGATTGAAAACAAAATCAACAGGCAAGTCACATTTGCCAAGAGAAGAAATGGGCTTCTCAAGAAGGCGTATGAGCTCTCAGTCCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGTAAACTCTATGAGTTCAGCAGCACCTCCTGCATGATGAAAACACTGGAGAAGTACCAGAAATACAGTTACAGTGCACTGGAGACCAGCCGATCAATTAATGACACTCAGACCAACTATCAAGAATATGTGATACTAAAATCAAAGGTCGAAGTGCTTCAACGTTCACAGAGGAACCTACTCGGGGAAGATCTTGCCCAAATGAACACAAGTGAACTGGAGCAGCTTGAGAATCAACTGGAGGCAGCACTCACCAATATTAGGTCAACAAAGACTCAGTTCATGCTTGGCCAGCTTGCTGATCTTCACAACCGGGAAACAGTGCTTATTGAAACTAATAATGCGTTAAGGAATAAGTTGGAAGAAAATAATAACTCACAAGTTCCAGCGGCACTATCATTGGAAGCTGAAGGGCCTAACATCCATTACACTCGCTTTCCTCCTCAACATTCAGAGGGGTTTTTCCAACCTTTGGGAGTTAACCCCAGCTTGCAAAATGGATATAGCCCGACGGGTGCTGATGATGTAAACGTTGGTGCTTCATCCCTAAATATGCGTGGATTTGTCTCTGGGTGGATGCTTTGA 738 0.4472 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSCMMKTLEKYQKYSYSALETSRSINDTQTNYQEYVILKSKVEVLQRSQRNLLGEDLAQMNTSELEQLENQLEAALTNIRSTKTQFMLGQLADLHNRETVLIETNNALRNKLEENNNSQVPAALSLEAEGPNIHYTRFPPQHSEGFFQPLGVNPSLQNGYSPTGADDVNVGASSLNMRGFVSGWML 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1878 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal14g1878 245 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal14g1878 245 Coils Coil 117 144 - -
Lal14g1878 245 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Lal14g1878 245 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lal14g1878 245 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Lal14g1878 245 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal14g1878 245 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 233 - -
Lal14g1878 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal14g1878 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal14g1878 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal14g1878 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal14g1878 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal14g1878 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal14g1878 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1878 Lal-Chr14 18242293 18252373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1878 1 245 MADS-box Gene Family AT5G15800 52.471 3.71e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal14g1878 K-box 7.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1878 K09264 - gmx:100797819 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g1283 22 15545518 15563101 Lal14g1878 14 18242293 18252373 ECH
Lal14g1878 14 18242293 18252373 Lal14g1878 14 18242293 18252373 ECH
Lal14g1878 14 18242293 18252373 Lal7g1342 7 18619335 18624471 LSH