Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1861 ATGAGCTGGCGCAGGGTTTTGAAATCGGCACAGGCTCTTGCTGCTCACACTTTTCTCTTTTGCTTCACTCTCTTGCTTGTCCTTAAGCTCGATCACTGTGTCTTCTGCTCTTGGTGGTTAATATTTTTACCTCTTTGGATGTTCCATGCCATTGTGGCTCGAGGAAGGTTTTCATTACCAGCGCCATCAGCTCCACGTAATCGACATTGGGCACCGTGCCACGCTGTCGTTGCAACGCCATTGATTATTGCATTTGAATCGCTCCTTTGTATATATCTCGAGAGCTTATATGTTGATGGTTATGCAGCGGTCAGTCTGAAGCTTGTATTCCTCCCCTTACTATTATTTGAAATCCTTATTCTCATTGACAATTTCAGAATGTGCAAGGCTCTCATGCCAGGGGATGAAGGAAACATGAGTGATGAGGCAATATGGGAAACTCTTCCTCACTTTTGGGTCGCAATCTCTATGGTCTTCTTCATTGCTGCTACAGTTTTCACACTCTTAAAACTGACTGGTGATGTTGCTTTGGGATGGTGGGACTTGTTTATTAACTTTGCTATTGCCCAGTGCTTTGCTTTTCTTGTATGTACGAAGTGGTCTAATCCAGTCATTCATAGAAGTTCTAGAGAACCCAGTTCATCTTCTACTACGATTAGATATCTTGACTGGACCAGTGGTTTAATGGCTTCTTCCGAGGAAGGTGAACGTCAGAACAGAGTGTGCAGCCTGCAAGACATAGGAGGTCATTTCATGAAAGTACCAGTTATTGTATTCCAGATTCTTCTTTGTATGTATTTAGAGGGAACACCTGCTTCTGCTGTATATATACCTCTTCCGGCTCTTTTCTCTCCTATTTTCGTACTACAAGGCGCTGGTGTATTGTTATCTGTCTCTAAGTTGGTGGAGAAACTTGTACTACTATTACATAGTGGAGCTGGTGGAGGAATGTATTTTAGATTTTCTTCAAGAGTTCATGATTGCTTGGGGTTCTTGCACCGTGGTTCTAGATTATTAGGTTGGTGGTCAATTGATGAAGGAAGCCGGGAAGAACAGGCATGCTTGTACCAAGAGGGAGCATCTGGGTATAATACATTCTCTGGTTATCCTCCTGATATTGTCAAGAAAATGCCTAAAAAGGATCTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAGCAGGCAGAAATTACGAAATACAGTCAACAGGAATATGAAAGGCTTCAAAATGAGAAAGTGTTATGCAGAGTTTGTTTTGAGGGAGAAATTAGTGTTGTATTGCTGCCATGTAGGCATCGCGTCCTTTGCAGTGCTTGCTCGCAAAAGTGTAGTAGGTGCCCAATTTGCCGCGTCTACATCGCAGAGCGCTTGCTTGTATATGATGTTTAG 1395 0.433 MSWRRVLKSAQALAAHTFLFCFTLLLVLKLDHCVFCSWWLIFLPLWMFHAIVARGRFSLPAPSAPRNRHWAPCHAVVATPLIIAFESLLCIYLESLYVDGYAAVSLKLVFLPLLLFEILILIDNFRMCKALMPGDEGNMSDEAIWETLPHFWVAISMVFFIAATVFTLLKLTGDVALGWWDLFINFAIAQCFAFLVCTKWSNPVIHRSSREPSSSSTTIRYLDWTSGLMASSEEGERQNRVCSLQDIGGHFMKVPVIVFQILLCMYLEGTPASAVYIPLPALFSPIFVLQGAGVLLSVSKLVEKLVLLLHSGAGGGMYFRFSSRVHDCLGFLHRGSRLLGWWSIDEGSREEQACLYQEGASGYNTFSGYPPDIVKKMPKKDLAEEVWRLQAALGEQAEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRVLCSACSQKCSRCPICRVYIAERLLVYDV 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1861 464 Pfam Transmembrane Fragile-X-F protein 28 289 IPR019396 -
Lal14g1861 464 ProSiteProfiles Zinc finger RING-type profile. 417 452 IPR001841 -
Lal14g1861 464 Pfam Zinc finger, C3HC4 type (RING finger) 414 456 - -
Lal14g1861 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 462 IPR013083 -
Lal14g1861 464 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 464 - -
Lal14g1861 464 SUPERFAMILY RING/U-box 408 457 - -
Lal14g1861 464 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 464 - -
Lal14g1861 464 SMART ring_2 417 451 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1861 Lal-Chr14 18142591 18150425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1861 1 464 C3H Transcription Factor Family AT1G73950 69.892 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1861 - - gmx:100791390 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1861 14 18142591 18150425 Lal14g1861 14 18142591 18150425 ECH
Lal14g1861 14 18142591 18150425 Lal19g1414 19 16844396 16851256 LSH