Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1843 ATGAGTTTTTTCGATGATTTGCCACCCTATATTCCGTTACCGCCACCATATGCTGCTGCCTCACAAACCGATGCCATTGTTTTAAGTGTTCAACAAGAACTCCCAGAGAACGATGAACCATTCATCCAGCATTCACCAATTGATGATCATGATCATGATCATGATCATTCATTCAAGAGAGCAAGAACAACTTCTTTTGAGAGCATCAACAACAACCATTCCAATGCACTTCCATACCCTCCAAGAATGATGATGATGCATCCACAGAGTAACAACAACAACCCTGCACCTAACAAAGTCGGAACCAGAACGAGCCACCTTTTCTTCAAGACCCGAATGTGTGCAAAGTTTATGCTTGGTTCCTGTAGGAATGGTGAGAACTGTAATTTTGCACATGGGATTGAAGATATGAGGCAACCGCCGCCTAATTGGCAGGAACTTGTTGGCTTGCGCGGAAGCAACGATGCTGCAGGGAATTGGGATGATGATCAGAAAATTATACATAAGATGAAGCTATGCAAGAAGTATTATAATGGGGAGGAATGTCCTTATGGTGAAAGGTGTAATTTCCTTCATGAGGACCCTGCCAAGTTTAGGGATGATTCTGGTCGGATTAAGGAGAGTTCAGTAATAAACATAGGGACTAATGGATCTCCAAAGTCCTACTTAAATGGCTATGATCATAATAATTCCGAAACTAATAAGCCCGTGGCTCTGAATGTGGGTTTAAATGCTTACAGGGGAAATGTGAGATCCACTTTTTGGAAGACTAAGCTATGTATCAAGTGGGAGACTACAGGTCACTGCCCCTTTGGGGAGGATTGTCACTTCGCTCATGGCCAATCTGAGTTGCATGTTCTTGGCGGACGCATCGAAACAGAAGCTGCAAGTGCCATTCCAATTGCAACTTATGCTGCTAGTCCAACATTTCCGAAACTTACATCTATTCCTATCATTGATGCTGCACCTGCTCCTAGCAACATAGCAAGTCCACCTCGGGCAAATGACGCTGCACCGGGGCAGAAGCGTTTGTTGAAGTGGAAAGGAACGAAGAAGATCAATCGAATTTATGCTGATTGGCTTGAGGATGAGCCACCTGTGCAAAACTTGCCAAGTTGA 1119 0.4397 MSFFDDLPPYIPLPPPYAAASQTDAIVLSVQQELPENDEPFIQHSPIDDHDHDHDHSFKRARTTSFESINNNHSNALPYPPRMMMMHPQSNNNNPAPNKVGTRTSHLFFKTRMCAKFMLGSCRNGENCNFAHGIEDMRQPPPNWQELVGLRGSNDAAGNWDDDQKIIHKMKLCKKYYNGEECPYGERCNFLHEDPAKFRDDSGRIKESSVINIGTNGSPKSYLNGYDHNNSETNKPVALNVGLNAYRGNVRSTFWKTKLCIKWETTGHCPFGEDCHFAHGQSELHVLGGRIETEAASAIPIATYAASPTFPKLTSIPIIDAAPAPSNIASPPRANDAAPGQKRLLKWKGTKKINRIYADWLEDEPPVQNLPS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1843 372 ProSiteProfiles Zinc finger C3H1-type profile. 108 135 IPR000571 GO:0046872
Lal14g1843 372 SUPERFAMILY CCCH zinc finger 167 194 IPR036855 GO:0046872
Lal14g1843 372 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 20 364 - -
Lal14g1843 372 SUPERFAMILY CCCH zinc finger 105 139 IPR036855 GO:0046872
Lal14g1843 372 SUPERFAMILY CCCH zinc finger 252 285 IPR036855 GO:0046872
Lal14g1843 372 ProSiteProfiles Zinc finger C3H1-type profile. 254 282 IPR000571 GO:0046872
Lal14g1843 372 SMART c3hfinal6 108 134 IPR000571 GO:0046872
Lal14g1843 372 SMART c3hfinal6 254 281 IPR000571 GO:0046872
Lal14g1843 372 SMART c3hfinal6 167 194 IPR000571 GO:0046872
Lal14g1843 372 Gene3D - 102 139 - -
Lal14g1843 372 Gene3D - 248 286 - -
Lal14g1843 372 Gene3D - 164 196 - -
Lal14g1843 372 PANTHER CCCH ZINC FINGER/TIS11-RELATED 20 364 IPR045877 GO:0003729
Lal14g1843 372 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 255 281 IPR000571 GO:0046872
Lal14g1843 372 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 169 192 IPR000571 GO:0046872
Lal14g1843 372 Pfam CCCH-type zinc finger 112 133 IPR041367 -
Lal14g1843 372 ProSiteProfiles Zinc finger C3H1-type profile. 167 195 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1843 Lal-Chr14 18040471 18042994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1843 254 284 C3H Transcription Factor Family AT1G68200 58.065 1.07e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal14g1843 zf-CCCH 1.4e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1843 - - lang:109345375 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1843 14 18040471 18042994 Lal14g1843 14 18040471 18042994 ECH
Lal14g1843 14 18040471 18042994 Lal7g1274 7 18157517 18160483 LSH
Lal14g1843 14 18040471 18042994 Lal19g1396 19 16691129 16694092 LSH