Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1840 ATGGATGAAGATTTGATCAAACGTAACACCGATTGCGTTTATTTCTTGGCCTCTCCCCTCACTTGCAAGAAGGGGTTTGAATGTGAGTATCGACATAATGAGGTTGCGAGGCTTAACCCAAGGGATTGCTGGTACTGGTTATCTGGGACTTGCCTTAATCCAACATGTGCTTTTAGACATCCTCCATTGGATGGGCATACTGGAACTCCATCTGAACCTACACAATCTCCCTTACCCACAAACAAAACAGCATTTCCATGTTATTACTTCTTCAATGGGTTTTGCATCAAAGGCGACAGATGCTCATTTTTGCACACGCCTGATGATAGCTTCTATACTGTAAAATCTATGAAGAATGACAATGGGAGCACTGATGCACTCATCCTAGAAAATAAAACAGGTGCAACATCAACTCCAACTGAATCACATTCTGACCCAGCTTTAACTGCCTTATCTGGCTTTAAAGTTCAGCATAAGGAAGATCTTCAGCTATCATTACCCAAAAATGTTAAACCGCAAGATGATTGCCTAGGAATATCTTCTTTTGAGTATAAAGAAGCTACAGTGACTAGGTCAGACTCTCTATCTCGAGGTGAAGGCTTTGTTCATAGCATATCTCATTTTTGCTCTGAGCAGAGTTCAGATGAGCAAGTAAATTGTCACAGAGAGCCTGAAGAGCGGTGGGAATCATCCCCTGGATTTGATGTTCTTGTTCATGATGGATTGGAGAACTTGGGTTACGAGGATGATTCTGAATATTTACCAGCCCTTGATAGGGAACACCAGGAACTGGATGAGCGATACTTGGGGTTTGAATTTAAAAGCCCAGATGAATGTGATACTATACATCCAGGAGCTGACTTTCTGTATGGACAAGAAACATACGATGGTTACAGATGTTTAGATAGAGATCTTATTCGTGTTGATGGCAGAAAAGTTTGCGCTTATTCCAGAGAGATATTCTTGGATTCTATATTGTCCAGGAAAAGGATTCGTATGCTTCCCGACAGGGCTAATTGTGGCAGGGACTTGGATCTTAGGGATCATCTGAGGAGACGTAAGGAAGTTAATTTTCCTCCTGCTACAGGTTTCTTAAAAAGATATGAATCGTCGTTCGCGGTTCGAAGCCTGGAAAGGCAGCGAGGGTATGGCATTGATCAGTGGCCAAGTAGAAGATTGACATCACAGTTGGGATTCAGAACCGTGGAATCAATTGGAGAGGTTGGAACTCTTTCAGCTGCGAACAGACGCAGGTTATTTAGGCATTCCATGCAGCAACATAGGCCAAGGGAGCATTATAGAGAAAAACTAGCTAAACAGCATTTTCTTTCATCCAGGAAACCAGTTTTAAAACAAAGGAATTCTGTCCAGGAGTCCACTACATTTTCAGGACCTAAGTCTCTTGCAGAAATTAAAGAAGAGAAGAAAAAGAAGACAGAAAAAAGTTTGCATTGTAGGAGCACATCGGCTGATTTCAAGGACCCCAAACCTCTGAGTGAAATTCTCAAGGACAAAAGGAGCATAGATCAAGTGAGAGATGGGAATACTTTCAGCAACTGA 1560 0.4199 MDEDLIKRNTDCVYFLASPLTCKKGFECEYRHNEVARLNPRDCWYWLSGTCLNPTCAFRHPPLDGHTGTPSEPTQSPLPTNKTAFPCYYFFNGFCIKGDRCSFLHTPDDSFYTVKSMKNDNGSTDALILENKTGATSTPTESHSDPALTALSGFKVQHKEDLQLSLPKNVKPQDDCLGISSFEYKEATVTRSDSLSRGEGFVHSISHFCSEQSSDEQVNCHREPEERWESSPGFDVLVHDGLENLGYEDDSEYLPALDREHQELDERYLGFEFKSPDECDTIHPGADFLYGQETYDGYRCLDRDLIRVDGRKVCAYSREIFLDSILSRKRIRMLPDRANCGRDLDLRDHLRRRKEVNFPPATGFLKRYESSFAVRSLERQRGYGIDQWPSRRLTSQLGFRTVESIGEVGTLSAANRRRLFRHSMQQHRPREHYREKLAKQHFLSSRKPVLKQRNSVQESTTFSGPKSLAEIKEEKKKKTEKSLHCRSTSADFKDPKPLSEILKDKRSIDQVRDGNTFSN 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1840 519 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 508 - -
Lal14g1840 519 Pfam RNA-binding, Nab2-type zinc finger 86 105 - -
Lal14g1840 519 MobiDBLite consensus disorder prediction 447 466 - -
Lal14g1840 519 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 508 - -
Lal14g1840 519 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Lal14g1840 519 SUPERFAMILY CCCH zinc finger 81 106 IPR036855 GO:0046872
Lal14g1840 519 SMART c3hfinal6 82 107 IPR000571 GO:0046872
Lal14g1840 519 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Lal14g1840 519 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Lal14g1840 519 Pfam Zinc-finger containing family 7 63 IPR041686 -
Lal14g1840 519 Gene3D - 3 63 - -
Lal14g1840 519 Gene3D - 74 136 - -
Lal14g1840 519 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Lal14g1840 519 MobiDBLite consensus disorder prediction 468 511 - -
Lal14g1840 519 ProSiteProfiles Zinc finger C3H1-type profile. 81 108 IPR000571 GO:0046872
Lal14g1840 519 MobiDBLite consensus disorder prediction 442 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1840 Lal-Chr14 18025592 18034904 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal14g1840 zf-CCCH_3 7.6e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1840 - - aprc:113847503 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1840 14 18025592 18034904 Lal14g1840 14 18025592 18034904 ECH