Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1796 ATGGGAAGTAATGTTACTGAAAAGATCCCTAGCAATAGCGGAACTGAAAGTTCAGAACCCACTATTGAGATAAAGATAAAAACATTGGACTCACAAACTTACACCCTCAGAGTGGATAAAGAGATGCCAGTCCCTGCTCTGAAAGAACAGATTGCTTCTGTAACTGGGGTATTATCAGAGCGGCAGCGCTTAATTTGCCAGGGGAAAGTTCTAAAGGATGATCAACTCCTGTCTGCTTACCGTATCCTTTGCCTTTATCTTTCTAATTTGTGGCAATCCGATTTACCACCGCCTGGAAGTTCATTCGATCACTCAGTGCCAGACCCAAATTCAAGCACAAGTCATGGTCACAGCAATCAAGTAGCCCCTGGTGTATTTATTGAAACTTTAGACGTGCCTCTTCAGGGAGATGGAATGTCTCCCGATTTTCAGAGGGTTGTTTCTGCTGTTCTCGGATCTATTGGAATTTCAATGAATGGCAGTGATGGGATTGACACCAGGGAGCAGGATTCCCAAGGCTCTGGAAGAACTTCAAATTCTAGTGGCATGCCAGATTCTTCTCATCCTCAATCTGAACAAGCTGGTGTGCGAATTTTACCTGATAGATTTCACAATATCTTTGGACCTCCTCCTGTGGTGTCTTTACAGCCTCCTGTGATTCCTGATTCTTTGACAACCTTGTCCCAATACCTGAGTCATATAAGGCATGAATTTGATGCAATTGTCAGAGAAGGGATGAACAATGGCCAAGCTGCTGAGGATCATGGGAATGAAGAAATGAGATCCATTTCTTCACGGTCGGGTTCAACAGCAGAAGGGATTCCATCACCCACATCTTTGGCAGAAGTTTTGCATTCTAGTAGACAAATGATTGTTGAACAAGTTGGGGAGTGCCTAATTCAACTTGCAAGCCTGCTGGAGAATCAAGCAAATGTAACCGATTCCTTGTTGCGGTCAAGCACTCAGTCTAGGGCTATGAGGACTGGAGTTCTATTTTATAACCTTGGTGCATTTTTACTTGAGCTTGGCCGTACAACGATGACAACACGTTTGGGTCAAACAGCGTCTGAAGCTGTAGTTAATGGCGGGCCTGCACTTTTTATATCCCCATCTGGTCCTAACCATATCATGGTTCAGCCTATTCCTTTTCACCCCGGAGCAAGCTTTGGTGCTCTCCCTGTGGTCACTACACAGTCTAACTCAAGTTTGGGTAGTGGTCTTGGCTCAAGTTTTATCCCAAGGCGTATCGACATACAGATTCGACGAGGTACATCAACAACCACACCCAATGCCAATCAAGAAGAGCACAGTGATACTCAGTCTGCTGCAGTTCAAAGAAATCAAGGTGAAAGTTATGTTAATCAGGCACCCTCAAGGCGTTTAAATGCATCTCTTGCTGGGGAGCCAGGAATAAGGGTAATGCCAATTAGAACCATGGTTGCTGCCGTACCAGGTCCCATAGGTCGCTCGCCTTCAGAACAATCTGGTAATTCTATGGGTTTTTACTATCCAGTTCTTGGGAGACTGCAACCTGTATCATATGGACATGCAAATAGTGAACAGGGATCTCAGCCACCAAGTCAGCATCATACTGCACAACAATCAACTATTCAATCCACATTGCAAAGGCAAGGCATGGTTGATTCTGCAAGGAATGGATCCGTATCAACTCCTAGAACAAGACAAGGGCCATCAAACTCTCGTGTTGTGAATATCAATGTTCTGTCTGCTGGTGGGGCCGAAAACAACCCAGAACCTGAGAGACAGATACGAAACAGTGTACTTCAACACTTAAGGGCTCTCTTTCCTGGCGGAGATATTCATGTTGAGGATTCAAGTTTACAGGGAACTGCTGCAGTTTCTATCTCAGAGCATGCTGCAACATTAGGGGATTCTTCCCATGTTCCTGAAGCAGAACCTAGAGCTAGTGATGAAGGACTTTTTTTGTCTAATGTACTTCGTGAGATCATGCCCCTCATATCTCAACGTACAGGGTCTGACAGAAATCCTTCAGTGGATCAAATGGCTGAAGATTATTCTACCCGAGTTGAAACTGATGCTGGGACATCACGCCGAGAGAGTGGTTCTGAACTAGACCTACCAAATCCAAAACGTCACAAGACTGAGAAGGCTTTTCTGAAGCAACCGAAAGTGTTTCTGAGCTCAAAGAAATCTGGGAAGGGAAAGAGGCCAGGAAAAGGTGGAAATCGATTTTGGAAATCCATTGGTCTTGGATTCAAGACCCCTAAGGAAGCCATTGATGGAACCTACATTGACAAGAAATGCCCCTTCACTGGCAATGTTTCCATCCGAGGCCGTATCTTATCAGGAACTTGTCACAGTGCTAAGATGAATAGGACTATAATTGTTAGGAGGAACTATCTTCATTTCATTAAGAAGTATCAAAGGTATGAAAAGAGGCATTCAAACATCCCTGCTCATGTATCACCTTGCTTCCGTGTGAAGGAAGGAGATCATGTTATTATTGGCCAATGCAGACCAATCTCAAAGACAGTGCGGTTCAATGTGCTGAAAGTGATCCCAGCTGGATCTTCTGGTGGTGCAAAGAAGGCATTTACTGGAATTTGA 2589 0.4446 MGSNVTEKIPSNSGTESSEPTIEIKIKTLDSQTYTLRVDKEMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYRILCLYLSNLWQSDLPPPGSSFDHSVPDPNSSTSHGHSNQVAPGVFIETLDVPLQGDGMSPDFQRVVSAVLGSIGISMNGSDGIDTREQDSQGSGRTSNSSGMPDSSHPQSEQAGVRILPDRFHNIFGPPPVVSLQPPVIPDSLTTLSQYLSHIRHEFDAIVREGMNNGQAAEDHGNEEMRSISSRSGSTAEGIPSPTSLAEVLHSSRQMIVEQVGECLIQLASLLENQANVTDSLLRSSTQSRAMRTGVLFYNLGAFLLELGRTTMTTRLGQTASEAVVNGGPALFISPSGPNHIMVQPIPFHPGASFGALPVVTTQSNSSLGSGLGSSFIPRRIDIQIRRGTSTTTPNANQEEHSDTQSAAVQRNQGESYVNQAPSRRLNASLAGEPGIRVMPIRTMVAAVPGPIGRSPSEQSGNSMGFYYPVLGRLQPVSYGHANSEQGSQPPSQHHTAQQSTIQSTLQRQGMVDSARNGSVSTPRTRQGPSNSRVVNINVLSAGGAENNPEPERQIRNSVLQHLRALFPGGDIHVEDSSLQGTAAVSISEHAATLGDSSHVPEAEPRASDEGLFLSNVLREIMPLISQRTGSDRNPSVDQMAEDYSTRVETDAGTSRRESGSELDLPNPKRHKTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPKEAIDGTYIDKKCPFTGNVSIRGRILSGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPISKTVRFNVLKVIPAGSSGGAKKAFTGI 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1796 862 SUPERFAMILY Nucleic acid-binding proteins 771 850 IPR012340 -
Lal14g1796 862 Pfam Ribosomal protein S17 777 845 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal14g1796 862 MobiDBLite consensus disorder prediction 514 567 - -
Lal14g1796 862 MobiDBLite consensus disorder prediction 684 713 - -
Lal14g1796 862 Gene3D - 701 861 - -
Lal14g1796 862 TIGRFAM uS17_arch: ribosomal protein uS17 746 846 IPR028333 -
Lal14g1796 862 Gene3D - 15 119 - -
Lal14g1796 862 SUPERFAMILY Ubiquitin-like 17 82 IPR029071 -
Lal14g1796 862 Pfam Ubiquitin family 24 82 IPR000626 GO:0005515
Lal14g1796 862 MobiDBLite consensus disorder prediction 425 461 - -
Lal14g1796 862 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 1 709 - -
Lal14g1796 862 Pfam Ribosomal_S17 N-terminal 707 775 IPR032440 -
Lal14g1796 862 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 1 709 - -
Lal14g1796 862 MobiDBLite consensus disorder prediction 1 20 - -
Lal14g1796 862 ProSitePatterns Ribosomal protein S17 signature. 824 836 IPR019979 GO:0003735|GO:0005840|GO:0006412
Lal14g1796 862 MobiDBLite consensus disorder prediction 262 276 - -
Lal14g1796 862 MobiDBLite consensus disorder prediction 159 192 - -
Lal14g1796 862 MobiDBLite consensus disorder prediction 250 276 - -
Lal14g1796 862 ProSiteProfiles Ubiquitin domain profile. 22 82 IPR000626 GO:0005515
Lal14g1796 862 MobiDBLite consensus disorder prediction 99 120 - -
Lal14g1796 862 MobiDBLite consensus disorder prediction 513 567 - -
Lal14g1796 862 MobiDBLite consensus disorder prediction 661 713 - -
Lal14g1796 862 PRINTS Ribosomal protein S17 family signature 791 814 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal14g1796 862 PRINTS Ribosomal protein S17 family signature 824 834 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal14g1796 862 PRINTS Ribosomal protein S17 family signature 834 841 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal14g1796 862 MobiDBLite consensus disorder prediction 158 192 - -
Lal14g1796 862 MobiDBLite consensus disorder prediction 662 678 - -
Lal14g1796 862 SMART ubq_7 22 88 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1796 Lal-Chr14 17707477 17719789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1796 707 862 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 89.744 4.09e-89 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1796 K23390 - gmx:100783070 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1796 14 17707477 17719789 Lal14g1796 14 17707477 17719789 ECH
Lal14g1796 14 17707477 17719789 Lal7g1208 7 17757780 17770689 LSH
Lal14g1796 14 17707477 17719789 Lal19g1342 19 16296710 16298812 LSH