Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1680 ATGATACCAGCTTACCCCCATTCACTATCTTCTGTCATGCCTCCTCTCGATCATAACCATCACCACCTCTTCACTCCAAATCATCATGCCTCCTCTTCTTTATATTCTTCTCCATCATATCATCATAGTGATCTCATCAACCCATCGGATCATGATCAACAACGATCTTTCTTCTGGGAACCAAATCACTTACCAAGTTATCTTGAAGAGACTAGGAAGGTTATTCCTGTTAGTGGATCGTCAAGGGATCATACAGCATCAGAAAATCACGAGAGCAGCATTGGAAGTAAGGTAACAGTTTGGAAGAAAGAAGATATGGCTGAAAATCTTCAAGCAGCTGATGAGGATGGTTCAGTGAAGTGGTTACCTTCAAAGATAAGAATTATGCGAAAGATGATGGTTTCAGGTCAAACCACAGATTCATATGTAGGAGGCAGCTCTATGCAGAAGTTTGAAGATCAAAAGCAACCACTGTCACCTCTTGGAACTGATAATAGCAGCAACAATTATCCAAATCACAATAATAACACTGTTAGGGTTTGTGCTGACTGCCACACCACTAAGACTCCTCTATGGAGGAGTGGTCCAAGGGGTCCCAAGTCACTATGCAATGCGTGTGGGATCAGACAAAGGAAAGCGAGACGTGCCATGGCAGCGGCTGCAGCAGCATCAGGAAATGGCACAATTGTAGTGGCAGCAGCTGAGAAATCCGTGAAGGGAAAAGAGAAGAAGTCCAAAGTTGAGTATGCACCACAACAGATGAAAAAGAAGCGCAAGCTTATAGCCAAACCCTCAAGTCAAAGTAGAAACAAGTTCAGTTTCGAGGATTTGACATTAAGATTAAGTCAGAATGTGGCTTTCAAACAAGTATTTCCTCGGGACGAAAGGGAAGCTGCTATTCTGCTTATGGCTTTATCTTATGGCTTAGTTCATGGATGA 939 0.4281 MIPAYPHSLSSVMPPLDHNHHHLFTPNHHASSSLYSSPSYHHSDLINPSDHDQQRSFFWEPNHLPSYLEETRKVIPVSGSSRDHTASENHESSIGSKVTVWKKEDMAENLQAADEDGSVKWLPSKIRIMRKMMVSGQTTDSYVGGSSMQKFEDQKQPLSPLGTDNSSNNYPNHNNNTVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAASGNGTIVVAAAEKSVKGKEKKSKVEYAPQQMKKKRKLIAKPSSQSRNKFSFEDLTLRLSQNVAFKQVFPRDEREAAILLMALSYGLVHG 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1680 312 Gene3D - 171 270 IPR013088 GO:0006355|GO:0008270
Lal14g1680 312 MobiDBLite consensus disorder prediction 140 171 - -
Lal14g1680 312 Pfam GATA zinc finger 181 214 IPR000679 GO:0006355|GO:0043565
Lal14g1680 312 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 312 - -
Lal14g1680 312 SMART GATA_3 175 226 IPR000679 GO:0006355|GO:0043565
Lal14g1680 312 ProSiteProfiles GATA-type zinc finger domain profile. 175 211 IPR000679 GO:0006355|GO:0043565
Lal14g1680 312 ProSitePatterns GATA-type zinc finger domain. 181 206 IPR000679 GO:0006355|GO:0043565
Lal14g1680 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 174 215 - -
Lal14g1680 312 CDD ZnF_GATA 180 208 IPR000679 GO:0006355|GO:0043565
Lal14g1680 312 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1680 Lal-Chr14 17006227 17008252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1680 97 312 C2C2-Gata Transcription Factor Family AT4G26150 40.741 3.81e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal14g1680 GATA 4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1680 - - gmx:100810698 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1680 14 17006227 17008252 Lal14g1680 14 17006227 17008252 ECH
Lal14g1680 14 17006227 17008252 Lal7g1080 7 16817856 16819815 LSH
Lal14g1680 14 17006227 17008252 Lal17g1548 17 16886106 16888283 PCT
Lal17g1548 17 16886106 16888283 Lal14g1680 14 17006227 17008252 PCT